Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04880 and MMP_RS04885 are separated by 57 nucleotides MMP_RS04885 and MMP_RS04890 are separated by 13 nucleotides MMP_RS04890 and MMP_RS04895 are separated by 22 nucleotides
MMP_RS04880: MMP_RS04880 - phosphoadenosine phosphosulfate reductase family protein, at 927,431 to 928,942
_RS04880
MMP_RS04885: MMP_RS04885 - sulfite exporter TauE/SafE family protein, at 929,000 to 929,812
_RS04885
MMP_RS04890: MMP_RS04890 - adenylyltransferase/cytidyltransferase family protein, at 929,826 to 930,278
_RS04890
MMP_RS04895: MMP_RS04895 - AI-2E family transporter, at 930,301 to 931,311
_RS04895
Position (kb) 929
930
931 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 928.945 kb on - strand at 928.998 kb on + strand at 929.002 kb on + strand at 929.006 kb on - strand at 929.006 kb on - strand at 929.007 kb on + strand at 929.007 kb on + strand at 929.014 kb on - strand at 929.014 kb on - strand at 929.014 kb on - strand at 929.015 kb on + strand at 929.070 kb on + strand at 929.152 kb on + strand, within MMP_RS04885 at 929.169 kb on - strand, within MMP_RS04885 at 929.174 kb on + strand, within MMP_RS04885 at 929.176 kb on + strand, within MMP_RS04885 at 929.209 kb on + strand, within MMP_RS04885 at 929.261 kb on - strand, within MMP_RS04885 at 929.262 kb on + strand, within MMP_RS04885 at 929.315 kb on + strand, within MMP_RS04885 at 929.373 kb on + strand, within MMP_RS04885 at 929.373 kb on + strand, within MMP_RS04885 at 929.414 kb on + strand, within MMP_RS04885 at 929.447 kb on - strand, within MMP_RS04885 at 929.495 kb on - strand, within MMP_RS04885 at 929.500 kb on + strand, within MMP_RS04885 at 929.537 kb on + strand, within MMP_RS04885 at 929.565 kb on - strand, within MMP_RS04885 at 929.565 kb on - strand, within MMP_RS04885 at 929.576 kb on - strand, within MMP_RS04885 at 929.576 kb on - strand, within MMP_RS04885 at 929.602 kb on + strand, within MMP_RS04885 at 929.602 kb on + strand, within MMP_RS04885 at 929.667 kb on - strand, within MMP_RS04885 at 929.668 kb on + strand, within MMP_RS04885 at 929.701 kb on + strand, within MMP_RS04885 at 929.702 kb on - strand, within MMP_RS04885 at 929.790 kb on + strand at 929.794 kb on + strand at 929.813 kb on + strand at 929.817 kb on + strand at 929.817 kb on + strand at 929.817 kb on + strand at 929.844 kb on + strand at 929.859 kb on + strand at 929.909 kb on + strand, within MMP_RS04890 at 929.938 kb on + strand, within MMP_RS04890 at 930.234 kb on - strand at 930.291 kb on - strand at 930.298 kb on - strand at 930.313 kb on - strand at 930.313 kb on - strand at 930.315 kb on - strand at 930.316 kb on + strand at 930.316 kb on + strand at 930.316 kb on + strand at 930.321 kb on - strand at 930.321 kb on - strand at 930.466 kb on - strand, within MMP_RS04895 at 930.532 kb on - strand, within MMP_RS04895 at 930.566 kb on - strand, within MMP_RS04895 at 930.566 kb on - strand, within MMP_RS04895 at 930.567 kb on + strand, within MMP_RS04895 at 930.567 kb on + strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.585 kb on - strand, within MMP_RS04895 at 930.586 kb on + strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.587 kb on - strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.588 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.590 kb on + strand, within MMP_RS04895 at 930.617 kb on + strand, within MMP_RS04895 at 930.648 kb on - strand, within MMP_RS04895 at 930.694 kb on - strand, within MMP_RS04895 at 930.705 kb on - strand, within MMP_RS04895 at 930.724 kb on - strand, within MMP_RS04895 at 930.725 kb on + strand, within MMP_RS04895 at 930.725 kb on + strand, within MMP_RS04895 at 930.743 kb on - strand, within MMP_RS04895 at 930.744 kb on + strand, within MMP_RS04895 at 930.744 kb on + strand, within MMP_RS04895 at 930.766 kb on + strand, within MMP_RS04895 at 930.788 kb on - strand, within MMP_RS04895 at 930.848 kb on - strand, within MMP_RS04895 at 930.848 kb on - strand, within MMP_RS04895 at 930.851 kb on - strand, within MMP_RS04895 at 930.851 kb on - strand, within MMP_RS04895 at 930.852 kb on + strand, within MMP_RS04895 at 930.852 kb on + strand, within MMP_RS04895 at 930.882 kb on - strand, within MMP_RS04895 at 930.921 kb on - strand, within MMP_RS04895 at 930.970 kb on - strand, within MMP_RS04895 at 931.000 kb on - strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.001 kb on + strand, within MMP_RS04895 at 931.002 kb on - strand, within MMP_RS04895 at 931.004 kb on - strand, within MMP_RS04895 at 931.005 kb on + strand, within MMP_RS04895 at 931.005 kb on + strand, within MMP_RS04895 at 931.019 kb on + strand, within MMP_RS04895 at 931.057 kb on - strand, within MMP_RS04895 at 931.084 kb on - strand, within MMP_RS04895 at 931.099 kb on - strand, within MMP_RS04895 at 931.125 kb on - strand, within MMP_RS04895 at 931.133 kb on + strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.191 kb on - strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.192 kb on + strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.193 kb on - strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.194 kb on + strand, within MMP_RS04895 at 931.218 kb on - strand at 931.218 kb on - strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.219 kb on + strand at 931.221 kb on - strand at 931.221 kb on - strand at 931.222 kb on + strand at 931.242 kb on - strand at 931.249 kb on + strand at 931.249 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 928,945 - +2.6 928,998 + +1.5 929,002 + -0.1 929,006 - +0.6 929,006 - -1.0 929,007 + +0.4 929,007 + -0.8 929,014 - +0.9 929,014 - -0.1 929,014 - -0.1 929,015 + -1.3 929,070 + -2.1 929,152 + MMP_RS04885 0.19 +0.8 929,169 - MMP_RS04885 0.21 +0.9 929,174 + MMP_RS04885 0.21 +1.0 929,176 + MMP_RS04885 0.22 -1.8 929,209 + MMP_RS04885 0.26 -0.1 929,261 - MMP_RS04885 0.32 +0.4 929,262 + MMP_RS04885 0.32 -2.6 929,315 + MMP_RS04885 0.39 +1.6 929,373 + MMP_RS04885 0.46 -1.2 929,373 + MMP_RS04885 0.46 -1.5 929,414 + MMP_RS04885 0.51 +0.9 929,447 - MMP_RS04885 0.55 +1.1 929,495 - MMP_RS04885 0.61 +1.6 929,500 + MMP_RS04885 0.62 +0.5 929,537 + MMP_RS04885 0.66 +1.2 929,565 - MMP_RS04885 0.69 -0.9 929,565 - MMP_RS04885 0.69 -1.0 929,576 - MMP_RS04885 0.71 +0.1 929,576 - MMP_RS04885 0.71 -1.9 929,602 + MMP_RS04885 0.74 -2.3 929,602 + MMP_RS04885 0.74 -0.6 929,667 - MMP_RS04885 0.82 -0.3 929,668 + MMP_RS04885 0.82 +1.4 929,701 + MMP_RS04885 0.86 +1.9 929,702 - MMP_RS04885 0.86 -2.5 929,790 + -1.2 929,794 + +0.0 929,813 + -0.1 929,817 + +1.7 929,817 + +1.4 929,817 + -0.2 929,844 + +1.1 929,859 + +1.3 929,909 + MMP_RS04890 0.18 -0.9 929,938 + MMP_RS04890 0.25 -1.5 930,234 - -0.2 930,291 - +1.6 930,298 - +0.2 930,313 - +0.5 930,313 - -0.2 930,315 - +0.3 930,316 + -0.3 930,316 + +1.7 930,316 + +0.0 930,321 - +0.1 930,321 - -0.4 930,466 - MMP_RS04895 0.16 -0.3 930,532 - MMP_RS04895 0.23 -1.1 930,566 - MMP_RS04895 0.26 +0.7 930,566 - MMP_RS04895 0.26 +2.1 930,567 + MMP_RS04895 0.26 +1.1 930,567 + MMP_RS04895 0.26 -3.3 930,585 - MMP_RS04895 0.28 -1.7 930,585 - MMP_RS04895 0.28 -2.5 930,585 - MMP_RS04895 0.28 +0.4 930,586 + MMP_RS04895 0.28 -1.7 930,587 - MMP_RS04895 0.28 +0.5 930,587 - MMP_RS04895 0.28 -0.8 930,587 - MMP_RS04895 0.28 +1.4 930,587 - MMP_RS04895 0.28 -0.2 930,587 - MMP_RS04895 0.28 +1.6 930,588 + MMP_RS04895 0.28 -0.1 930,588 + MMP_RS04895 0.28 -1.4 930,588 + MMP_RS04895 0.28 +0.1 930,588 + MMP_RS04895 0.28 -2.0 930,588 + MMP_RS04895 0.28 +0.9 930,588 + MMP_RS04895 0.28 -1.6 930,590 + MMP_RS04895 0.29 +0.3 930,590 + MMP_RS04895 0.29 +1.1 930,590 + MMP_RS04895 0.29 +1.0 930,617 + MMP_RS04895 0.31 -0.5 930,648 - MMP_RS04895 0.34 +0.3 930,694 - MMP_RS04895 0.39 -1.4 930,705 - MMP_RS04895 0.40 -2.0 930,724 - MMP_RS04895 0.42 -0.6 930,725 + MMP_RS04895 0.42 -0.1 930,725 + MMP_RS04895 0.42 -2.7 930,743 - MMP_RS04895 0.44 +0.3 930,744 + MMP_RS04895 0.44 -0.7 930,744 + MMP_RS04895 0.44 -1.0 930,766 + MMP_RS04895 0.46 +0.6 930,788 - MMP_RS04895 0.48 -0.1 930,848 - MMP_RS04895 0.54 +0.5 930,848 - MMP_RS04895 0.54 +1.1 930,851 - MMP_RS04895 0.54 -0.1 930,851 - MMP_RS04895 0.54 +0.4 930,852 + MMP_RS04895 0.55 +0.4 930,852 + MMP_RS04895 0.55 -0.1 930,882 - MMP_RS04895 0.57 -0.2 930,921 - MMP_RS04895 0.61 +0.3 930,970 - MMP_RS04895 0.66 -1.9 931,000 - MMP_RS04895 0.69 +0.5 931,001 + MMP_RS04895 0.69 -0.1 931,001 + MMP_RS04895 0.69 +1.8 931,001 + MMP_RS04895 0.69 -0.9 931,001 + MMP_RS04895 0.69 -2.2 931,001 + MMP_RS04895 0.69 +0.9 931,002 - MMP_RS04895 0.69 -4.1 931,004 - MMP_RS04895 0.70 -0.5 931,005 + MMP_RS04895 0.70 +0.6 931,005 + MMP_RS04895 0.70 -2.7 931,019 + MMP_RS04895 0.71 -4.7 931,057 - MMP_RS04895 0.75 +0.7 931,084 - MMP_RS04895 0.77 -2.1 931,099 - MMP_RS04895 0.79 -2.4 931,125 - MMP_RS04895 0.82 -4.7 931,133 + MMP_RS04895 0.82 -0.8 931,191 - MMP_RS04895 0.88 -2.9 931,191 - MMP_RS04895 0.88 -1.2 931,191 - MMP_RS04895 0.88 -0.2 931,191 - MMP_RS04895 0.88 +1.1 931,191 - MMP_RS04895 0.88 +0.9 931,192 + MMP_RS04895 0.88 -1.1 931,192 + MMP_RS04895 0.88 +1.5 931,192 + MMP_RS04895 0.88 +0.2 931,193 - MMP_RS04895 0.88 +0.7 931,193 - MMP_RS04895 0.88 -1.8 931,193 - MMP_RS04895 0.88 +1.0 931,194 + MMP_RS04895 0.88 +0.5 931,194 + MMP_RS04895 0.88 -0.1 931,194 + MMP_RS04895 0.88 +0.4 931,194 + MMP_RS04895 0.88 +0.9 931,218 - +1.5 931,218 - -0.9 931,219 + +2.2 931,219 + -4.0 931,219 + +0.6 931,219 + +0.5 931,221 - -0.1 931,221 - +0.5 931,222 + +0.9 931,242 - -1.7 931,249 + -1.3 931,249 + -0.8
Or see this region's nucleotide sequence