Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04870 and MMP_RS04875 are separated by 22 nucleotides MMP_RS04875 and MMP_RS04880 are separated by 64 nucleotides MMP_RS04880 and MMP_RS04885 are separated by 57 nucleotides MMP_RS04885 and MMP_RS04890 are separated by 13 nucleotides
MMP_RS04870: MMP_RS04870 - TIGR02253 family HAD-type hydrolase, at 926,379 to 927,056
_RS04870
MMP_RS04875: MMP_RS04875 - energy-converting hydrogenase B subunit P, at 927,079 to 927,366
_RS04875
MMP_RS04880: MMP_RS04880 - phosphoadenosine phosphosulfate reductase family protein, at 927,431 to 928,942
_RS04880
MMP_RS04885: MMP_RS04885 - sulfite exporter TauE/SafE family protein, at 929,000 to 929,812
_RS04885
MMP_RS04890: MMP_RS04890 - adenylyltransferase/cytidyltransferase family protein, at 929,826 to 930,278
_RS04890
Position (kb) 927
928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 926.431 kb on - strand at 926.432 kb on + strand at 926.440 kb on + strand at 926.440 kb on + strand at 926.440 kb on + strand at 926.517 kb on + strand, within MMP_RS04870 at 926.568 kb on + strand, within MMP_RS04870 at 926.589 kb on + strand, within MMP_RS04870 at 926.620 kb on - strand, within MMP_RS04870 at 926.621 kb on + strand, within MMP_RS04870 at 926.635 kb on + strand, within MMP_RS04870 at 926.636 kb on - strand, within MMP_RS04870 at 926.637 kb on + strand, within MMP_RS04870 at 926.808 kb on + strand, within MMP_RS04870 at 926.912 kb on - strand, within MMP_RS04870 at 927.073 kb on - strand at 927.073 kb on - strand at 927.073 kb on - strand at 927.074 kb on + strand at 927.076 kb on + strand at 927.083 kb on + strand at 927.118 kb on + strand, within MMP_RS04875 at 927.158 kb on + strand, within MMP_RS04875 at 927.294 kb on + strand, within MMP_RS04875 at 927.313 kb on - strand, within MMP_RS04875 at 927.314 kb on + strand, within MMP_RS04875 at 927.317 kb on - strand, within MMP_RS04875 at 927.318 kb on + strand, within MMP_RS04875 at 927.318 kb on + strand, within MMP_RS04875 at 927.352 kb on - strand at 927.353 kb on + strand at 927.367 kb on - strand at 927.367 kb on - strand at 927.368 kb on + strand at 927.368 kb on + strand at 927.368 kb on + strand at 927.369 kb on - strand at 927.369 kb on - strand at 927.369 kb on - strand at 927.370 kb on + strand at 927.370 kb on + strand at 927.370 kb on + strand at 927.386 kb on - strand at 927.392 kb on - strand at 927.393 kb on + strand at 927.397 kb on - strand at 927.398 kb on + strand at 927.398 kb on + strand at 927.398 kb on + strand at 927.411 kb on - strand at 927.411 kb on - strand at 927.411 kb on - strand at 927.412 kb on + strand at 927.412 kb on + strand at 927.412 kb on + strand at 927.412 kb on + strand at 927.412 kb on + strand at 927.412 kb on + strand at 927.413 kb on - strand at 927.413 kb on - strand at 927.413 kb on - strand at 927.414 kb on + strand at 927.414 kb on + strand at 927.414 kb on + strand at 927.414 kb on + strand at 927.425 kb on - strand at 927.606 kb on + strand, within MMP_RS04880 at 927.675 kb on + strand, within MMP_RS04880 at 927.678 kb on + strand, within MMP_RS04880 at 927.695 kb on + strand, within MMP_RS04880 at 927.895 kb on - strand, within MMP_RS04880 at 927.899 kb on - strand, within MMP_RS04880 at 927.996 kb on - strand, within MMP_RS04880 at 927.996 kb on - strand, within MMP_RS04880 at 928.000 kb on - strand, within MMP_RS04880 at 928.001 kb on + strand, within MMP_RS04880 at 928.001 kb on + strand, within MMP_RS04880 at 928.001 kb on + strand, within MMP_RS04880 at 928.001 kb on + strand, within MMP_RS04880 at 928.001 kb on + strand, within MMP_RS04880 at 928.112 kb on - strand, within MMP_RS04880 at 928.448 kb on + strand, within MMP_RS04880 at 928.452 kb on + strand, within MMP_RS04880 at 928.452 kb on + strand, within MMP_RS04880 at 928.452 kb on + strand, within MMP_RS04880 at 928.470 kb on + strand, within MMP_RS04880 at 928.519 kb on - strand, within MMP_RS04880 at 928.678 kb on - strand, within MMP_RS04880 at 928.730 kb on + strand, within MMP_RS04880 at 928.945 kb on - strand at 928.998 kb on + strand at 929.002 kb on + strand at 929.006 kb on - strand at 929.006 kb on - strand at 929.007 kb on + strand at 929.007 kb on + strand at 929.014 kb on - strand at 929.014 kb on - strand at 929.014 kb on - strand at 929.015 kb on + strand at 929.070 kb on + strand at 929.152 kb on + strand, within MMP_RS04885 at 929.169 kb on - strand, within MMP_RS04885 at 929.174 kb on + strand, within MMP_RS04885 at 929.176 kb on + strand, within MMP_RS04885 at 929.209 kb on + strand, within MMP_RS04885 at 929.261 kb on - strand, within MMP_RS04885 at 929.262 kb on + strand, within MMP_RS04885 at 929.315 kb on + strand, within MMP_RS04885 at 929.373 kb on + strand, within MMP_RS04885 at 929.373 kb on + strand, within MMP_RS04885 at 929.414 kb on + strand, within MMP_RS04885 at 929.447 kb on - strand, within MMP_RS04885 at 929.495 kb on - strand, within MMP_RS04885 at 929.500 kb on + strand, within MMP_RS04885 at 929.537 kb on + strand, within MMP_RS04885 at 929.565 kb on - strand, within MMP_RS04885 at 929.565 kb on - strand, within MMP_RS04885 at 929.576 kb on - strand, within MMP_RS04885 at 929.576 kb on - strand, within MMP_RS04885 at 929.602 kb on + strand, within MMP_RS04885 at 929.602 kb on + strand, within MMP_RS04885 at 929.667 kb on - strand, within MMP_RS04885 at 929.668 kb on + strand, within MMP_RS04885 at 929.701 kb on + strand, within MMP_RS04885 at 929.702 kb on - strand, within MMP_RS04885 at 929.790 kb on + strand at 929.794 kb on + strand at 929.813 kb on + strand at 929.817 kb on + strand at 929.817 kb on + strand at 929.817 kb on + strand at 929.844 kb on + strand at 929.859 kb on + strand at 929.909 kb on + strand, within MMP_RS04890 at 929.938 kb on + strand, within MMP_RS04890
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 926,431 - -3.9 926,432 + -1.4 926,440 + +0.1 926,440 + -1.5 926,440 + +0.5 926,517 + MMP_RS04870 0.20 -2.4 926,568 + MMP_RS04870 0.28 -1.8 926,589 + MMP_RS04870 0.31 -2.8 926,620 - MMP_RS04870 0.36 -0.4 926,621 + MMP_RS04870 0.36 -0.8 926,635 + MMP_RS04870 0.38 +0.6 926,636 - MMP_RS04870 0.38 -1.6 926,637 + MMP_RS04870 0.38 -0.2 926,808 + MMP_RS04870 0.63 -2.7 926,912 - MMP_RS04870 0.79 +0.9 927,073 - -1.1 927,073 - +0.6 927,073 - -1.3 927,074 + -0.3 927,076 + -0.9 927,083 + +1.1 927,118 + MMP_RS04875 0.14 -0.6 927,158 + MMP_RS04875 0.27 +0.6 927,294 + MMP_RS04875 0.75 -1.0 927,313 - MMP_RS04875 0.81 +0.2 927,314 + MMP_RS04875 0.82 +0.6 927,317 - MMP_RS04875 0.83 -0.3 927,318 + MMP_RS04875 0.83 +0.5 927,318 + MMP_RS04875 0.83 +0.2 927,352 - +0.4 927,353 + -2.3 927,367 - +0.4 927,367 - +1.9 927,368 + +0.0 927,368 + +1.1 927,368 + -2.2 927,369 - -3.7 927,369 - -0.7 927,369 - -2.0 927,370 + -2.2 927,370 + -1.3 927,370 + -0.6 927,386 - +1.1 927,392 - -1.9 927,393 + -1.4 927,397 - +1.1 927,398 + -2.2 927,398 + -3.3 927,398 + +0.6 927,411 - +0.4 927,411 - +0.4 927,411 - -1.7 927,412 + +0.6 927,412 + +1.0 927,412 + +1.2 927,412 + -0.6 927,412 + -0.6 927,412 + +0.8 927,413 - -2.4 927,413 - +1.1 927,413 - +0.1 927,414 + +1.5 927,414 + +0.3 927,414 + -1.9 927,414 + +1.1 927,425 - +1.3 927,606 + MMP_RS04880 0.12 +0.1 927,675 + MMP_RS04880 0.16 +0.8 927,678 + MMP_RS04880 0.16 -1.6 927,695 + MMP_RS04880 0.17 +0.8 927,895 - MMP_RS04880 0.31 -3.3 927,899 - MMP_RS04880 0.31 -1.6 927,996 - MMP_RS04880 0.37 +0.1 927,996 - MMP_RS04880 0.37 -0.5 928,000 - MMP_RS04880 0.38 -2.7 928,001 + MMP_RS04880 0.38 -1.3 928,001 + MMP_RS04880 0.38 -0.4 928,001 + MMP_RS04880 0.38 -1.5 928,001 + MMP_RS04880 0.38 -0.8 928,001 + MMP_RS04880 0.38 -1.1 928,112 - MMP_RS04880 0.45 -0.7 928,448 + MMP_RS04880 0.67 +1.2 928,452 + MMP_RS04880 0.68 +0.9 928,452 + MMP_RS04880 0.68 +0.7 928,452 + MMP_RS04880 0.68 -1.6 928,470 + MMP_RS04880 0.69 +0.6 928,519 - MMP_RS04880 0.72 -0.2 928,678 - MMP_RS04880 0.82 -1.5 928,730 + MMP_RS04880 0.86 +1.4 928,945 - +2.6 928,998 + +1.5 929,002 + -0.1 929,006 - +0.6 929,006 - -1.0 929,007 + +0.4 929,007 + -0.8 929,014 - +0.9 929,014 - -0.1 929,014 - -0.1 929,015 + -1.3 929,070 + -2.1 929,152 + MMP_RS04885 0.19 +0.8 929,169 - MMP_RS04885 0.21 +0.9 929,174 + MMP_RS04885 0.21 +1.0 929,176 + MMP_RS04885 0.22 -1.8 929,209 + MMP_RS04885 0.26 -0.1 929,261 - MMP_RS04885 0.32 +0.4 929,262 + MMP_RS04885 0.32 -2.6 929,315 + MMP_RS04885 0.39 +1.6 929,373 + MMP_RS04885 0.46 -1.2 929,373 + MMP_RS04885 0.46 -1.5 929,414 + MMP_RS04885 0.51 +0.9 929,447 - MMP_RS04885 0.55 +1.1 929,495 - MMP_RS04885 0.61 +1.6 929,500 + MMP_RS04885 0.62 +0.5 929,537 + MMP_RS04885 0.66 +1.2 929,565 - MMP_RS04885 0.69 -0.9 929,565 - MMP_RS04885 0.69 -1.0 929,576 - MMP_RS04885 0.71 +0.1 929,576 - MMP_RS04885 0.71 -1.9 929,602 + MMP_RS04885 0.74 -2.3 929,602 + MMP_RS04885 0.74 -0.6 929,667 - MMP_RS04885 0.82 -0.3 929,668 + MMP_RS04885 0.82 +1.4 929,701 + MMP_RS04885 0.86 +1.9 929,702 - MMP_RS04885 0.86 -2.5 929,790 + -1.2 929,794 + +0.0 929,813 + -0.1 929,817 + +1.7 929,817 + +1.4 929,817 + -0.2 929,844 + +1.1 929,859 + +1.3 929,909 + MMP_RS04890 0.18 -0.9 929,938 + MMP_RS04890 0.25 -1.5
Or see this region's nucleotide sequence