Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04815

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04810 and MMP_RS04815 are separated by 10 nucleotidesMMP_RS04815 and MMP_RS04820 are separated by 16 nucleotides MMP_RS04810: MMP_RS04810 - chemotaxis protein CheA, at 914,756 to 917,518 _RS04810 MMP_RS04815: MMP_RS04815 - chemotaxis protein CheD, at 917,529 to 917,993 _RS04815 MMP_RS04820: MMP_RS04820 - methyl-accepting chemotaxis protein, at 918,010 to 919,413 _RS04820 Position (kb) 917 918Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 916.595 kb on + strand, within MMP_RS04810at 916.618 kb on - strand, within MMP_RS04810at 916.656 kb on - strand, within MMP_RS04810at 916.657 kb on + strand, within MMP_RS04810at 916.657 kb on + strand, within MMP_RS04810at 916.681 kb on - strand, within MMP_RS04810at 916.829 kb on + strand, within MMP_RS04810at 916.829 kb on + strand, within MMP_RS04810at 916.833 kb on - strand, within MMP_RS04810at 916.834 kb on + strand, within MMP_RS04810at 916.834 kb on + strand, within MMP_RS04810at 916.837 kb on - strand, within MMP_RS04810at 916.838 kb on + strand, within MMP_RS04810at 916.842 kb on - strand, within MMP_RS04810at 916.842 kb on - strand, within MMP_RS04810at 916.842 kb on - strand, within MMP_RS04810at 916.842 kb on - strand, within MMP_RS04810at 916.843 kb on + strand, within MMP_RS04810at 916.843 kb on + strand, within MMP_RS04810at 916.846 kb on - strand, within MMP_RS04810at 916.847 kb on + strand, within MMP_RS04810at 916.879 kb on - strand, within MMP_RS04810at 916.879 kb on - strand, within MMP_RS04810at 916.880 kb on + strand, within MMP_RS04810at 916.880 kb on + strand, within MMP_RS04810at 917.034 kb on - strand, within MMP_RS04810at 917.035 kb on + strand, within MMP_RS04810at 917.122 kb on + strand, within MMP_RS04810at 917.125 kb on - strand, within MMP_RS04810at 917.125 kb on - strand, within MMP_RS04810at 917.126 kb on + strand, within MMP_RS04810at 917.134 kb on - strand, within MMP_RS04810at 917.135 kb on + strand, within MMP_RS04810at 917.136 kb on - strand, within MMP_RS04810at 917.157 kb on - strand, within MMP_RS04810at 917.167 kb on - strand, within MMP_RS04810at 917.167 kb on - strand, within MMP_RS04810at 917.171 kb on - strand, within MMP_RS04810at 917.172 kb on + strand, within MMP_RS04810at 917.306 kb on + strandat 917.306 kb on + strandat 917.306 kb on + strandat 917.336 kb on - strandat 917.337 kb on + strandat 917.344 kb on + strandat 917.392 kb on - strandat 917.416 kb on + strandat 917.433 kb on - strandat 917.433 kb on - strandat 917.470 kb on + strandat 917.488 kb on + strandat 917.618 kb on + strand, within MMP_RS04815at 917.660 kb on + strand, within MMP_RS04815at 917.660 kb on + strand, within MMP_RS04815at 917.706 kb on - strand, within MMP_RS04815at 917.715 kb on + strand, within MMP_RS04815at 917.814 kb on + strand, within MMP_RS04815at 917.822 kb on - strand, within MMP_RS04815at 917.822 kb on - strand, within MMP_RS04815at 917.822 kb on - strand, within MMP_RS04815at 917.927 kb on - strand, within MMP_RS04815at 917.927 kb on - strand, within MMP_RS04815at 917.943 kb on + strand, within MMP_RS04815at 917.959 kb on - strandat 917.988 kb on + strandat 917.990 kb on + strandat 917.991 kb on - strandat 917.992 kb on + strandat 917.998 kb on + strandat 917.998 kb on + strandat 918.005 kb on - strandat 918.005 kb on - strandat 918.010 kb on + strandat 918.010 kb on + strandat 918.010 kb on + strandat 918.029 kb on + strandat 918.029 kb on + strandat 918.042 kb on + strandat 918.045 kb on - strandat 918.046 kb on + strandat 918.093 kb on + strandat 918.121 kb on + strandat 918.122 kb on - strandat 918.123 kb on + strandat 918.123 kb on + strandat 918.139 kb on + strandat 918.139 kb on + strandat 918.159 kb on - strand, within MMP_RS04820at 918.176 kb on - strand, within MMP_RS04820at 918.176 kb on - strand, within MMP_RS04820at 918.177 kb on + strand, within MMP_RS04820at 918.177 kb on + strand, within MMP_RS04820at 918.206 kb on - strand, within MMP_RS04820at 918.206 kb on - strand, within MMP_RS04820at 918.206 kb on - strand, within MMP_RS04820at 918.206 kb on - strand, within MMP_RS04820at 918.276 kb on - strand, within MMP_RS04820at 918.382 kb on + strand, within MMP_RS04820at 918.433 kb on - strand, within MMP_RS04820at 918.433 kb on - strand, within MMP_RS04820at 918.450 kb on + strand, within MMP_RS04820at 918.453 kb on - strand, within MMP_RS04820at 918.453 kb on - strand, within MMP_RS04820at 918.453 kb on - strand, within MMP_RS04820at 918.453 kb on - strand, within MMP_RS04820at 918.454 kb on + strand, within MMP_RS04820at 918.467 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.470 kb on - strand, within MMP_RS04820at 918.471 kb on + strand, within MMP_RS04820at 918.471 kb on + strand, within MMP_RS04820at 918.471 kb on + strand, within MMP_RS04820at 918.488 kb on - strand, within MMP_RS04820at 918.644 kb on - strand, within MMP_RS04820at 918.644 kb on - strand, within MMP_RS04820at 918.965 kb on - strand, within MMP_RS04820at 918.982 kb on + strand, within MMP_RS04820

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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916,595 + MMP_RS04810 0.67 +0.0
916,618 - MMP_RS04810 0.67 -1.9
916,656 - MMP_RS04810 0.69 +1.3
916,657 + MMP_RS04810 0.69 +1.0
916,657 + MMP_RS04810 0.69 +0.5
916,681 - MMP_RS04810 0.70 +1.5
916,829 + MMP_RS04810 0.75 -2.2
916,829 + MMP_RS04810 0.75 -4.2
916,833 - MMP_RS04810 0.75 +0.9
916,834 + MMP_RS04810 0.75 -1.2
916,834 + MMP_RS04810 0.75 +1.4
916,837 - MMP_RS04810 0.75 +2.0
916,838 + MMP_RS04810 0.75 +2.0
916,842 - MMP_RS04810 0.75 -2.4
916,842 - MMP_RS04810 0.75 -0.1
916,842 - MMP_RS04810 0.75 -3.1
916,842 - MMP_RS04810 0.75 +0.7
916,843 + MMP_RS04810 0.76 +1.4
916,843 + MMP_RS04810 0.76 -2.4
916,846 - MMP_RS04810 0.76 +0.5
916,847 + MMP_RS04810 0.76 -0.0
916,879 - MMP_RS04810 0.77 +0.8
916,879 - MMP_RS04810 0.77 +0.2
916,880 + MMP_RS04810 0.77 -1.1
916,880 + MMP_RS04810 0.77 +0.6
917,034 - MMP_RS04810 0.82 -2.3
917,035 + MMP_RS04810 0.82 -0.4
917,122 + MMP_RS04810 0.86 -0.6
917,125 - MMP_RS04810 0.86 +0.1
917,125 - MMP_RS04810 0.86 +1.2
917,126 + MMP_RS04810 0.86 -1.0
917,134 - MMP_RS04810 0.86 -1.7
917,135 + MMP_RS04810 0.86 +1.3
917,136 - MMP_RS04810 0.86 -2.1
917,157 - MMP_RS04810 0.87 -0.2
917,167 - MMP_RS04810 0.87 -1.1
917,167 - MMP_RS04810 0.87 +0.6
917,171 - MMP_RS04810 0.87 -1.0
917,172 + MMP_RS04810 0.87 +0.5
917,306 + -0.2
917,306 + -0.6
917,306 + +0.6
917,336 - +1.5
917,337 + +1.1
917,344 + -1.0
917,392 - +1.6
917,416 + +1.2
917,433 - -1.4
917,433 - -0.2
917,470 + +0.5
917,488 + +0.3
917,618 + MMP_RS04815 0.19 +0.4
917,660 + MMP_RS04815 0.28 -0.7
917,660 + MMP_RS04815 0.28 +1.1
917,706 - MMP_RS04815 0.38 +1.0
917,715 + MMP_RS04815 0.40 +1.5
917,814 + MMP_RS04815 0.61 +0.3
917,822 - MMP_RS04815 0.63 +0.0
917,822 - MMP_RS04815 0.63 +1.0
917,822 - MMP_RS04815 0.63 +0.4
917,927 - MMP_RS04815 0.86 +0.2
917,927 - MMP_RS04815 0.86 +1.7
917,943 + MMP_RS04815 0.89 +0.8
917,959 - -2.0
917,988 + +0.0
917,990 + +1.0
917,991 - +0.8
917,992 + -0.8
917,998 + -2.4
917,998 + +0.0
918,005 - +1.0
918,005 - -1.9
918,010 + +0.6
918,010 + +1.3
918,010 + -0.8
918,029 + -0.8
918,029 + +1.4
918,042 + +0.3
918,045 - -0.4
918,046 + -2.6
918,093 + -0.5
918,121 + -3.5
918,122 - -0.7
918,123 + -0.3
918,123 + +0.2
918,139 + -0.1
918,139 + -0.5
918,159 - MMP_RS04820 0.11 -1.2
918,176 - MMP_RS04820 0.12 -0.1
918,176 - MMP_RS04820 0.12 +1.0
918,177 + MMP_RS04820 0.12 -0.9
918,177 + MMP_RS04820 0.12 -0.9
918,206 - MMP_RS04820 0.14 -2.4
918,206 - MMP_RS04820 0.14 +1.6
918,206 - MMP_RS04820 0.14 +1.3
918,206 - MMP_RS04820 0.14 +0.3
918,276 - MMP_RS04820 0.19 +0.8
918,382 + MMP_RS04820 0.26 -0.9
918,433 - MMP_RS04820 0.30 +1.1
918,433 - MMP_RS04820 0.30 +0.4
918,450 + MMP_RS04820 0.31 +0.7
918,453 - MMP_RS04820 0.32 +1.4
918,453 - MMP_RS04820 0.32 -0.3
918,453 - MMP_RS04820 0.32 +0.5
918,453 - MMP_RS04820 0.32 +0.9
918,454 + MMP_RS04820 0.32 -1.1
918,467 - MMP_RS04820 0.33 -0.1
918,470 - MMP_RS04820 0.33 +0.8
918,470 - MMP_RS04820 0.33 -2.5
918,470 - MMP_RS04820 0.33 +1.6
918,470 - MMP_RS04820 0.33 +0.4
918,470 - MMP_RS04820 0.33 -0.4
918,471 + MMP_RS04820 0.33 -0.5
918,471 + MMP_RS04820 0.33 +0.0
918,471 + MMP_RS04820 0.33 +1.1
918,488 - MMP_RS04820 0.34 +0.7
918,644 - MMP_RS04820 0.45 +0.3
918,644 - MMP_RS04820 0.45 -4.1
918,965 - MMP_RS04820 0.68 +0.8
918,982 + MMP_RS04820 0.69 -0.5

Or see this region's nucleotide sequence