Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04725 and MMP_RS04730 are separated by 43 nucleotides MMP_RS04730 and MMP_RS04735 are separated by 75 nucleotides MMP_RS04735 and MMP_RS04740 are separated by 41 nucleotides MMP_RS04740 and MMP_RS04745 are separated by 18 nucleotides MMP_RS04745 and MMP_RS04750 are separated by 84 nucleotides
MMP_RS04725: MMP_RS04725 - hypothetical protein, at 902,427 to 902,855
_RS04725
MMP_RS04730: MMP_RS04730 - flavodoxin family protein, at 902,899 to 903,480
_RS04730
MMP_RS04735: MMP_RS04735 - tautomerase family protein, at 903,556 to 903,750
_RS04735
MMP_RS04740: MMP_RS04740 - DUF473 domain-containing protein, at 903,792 to 904,169
_RS04740
MMP_RS04745: MMP_RS04745 - proteasome assembly chaperone family protein, at 904,188 to 904,895
_RS04745
MMP_RS04750: MMP_RS04750 - TIGR00454 family protein, at 904,980 to 905,588
_RS04750
Position (kb) 903
904
905 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 902.817 kb on - strand at 902.873 kb on - strand at 902.873 kb on - strand at 902.897 kb on - strand at 902.897 kb on - strand at 902.897 kb on - strand at 902.898 kb on + strand at 902.898 kb on + strand at 902.900 kb on - strand at 902.902 kb on - strand at 902.903 kb on + strand at 902.903 kb on + strand at 902.943 kb on - strand at 903.018 kb on + strand, within MMP_RS04730 at 903.088 kb on - strand, within MMP_RS04730 at 903.094 kb on + strand, within MMP_RS04730 at 903.160 kb on + strand, within MMP_RS04730 at 903.171 kb on - strand, within MMP_RS04730 at 903.171 kb on - strand, within MMP_RS04730 at 903.228 kb on + strand, within MMP_RS04730 at 903.243 kb on - strand, within MMP_RS04730 at 903.244 kb on + strand, within MMP_RS04730 at 903.247 kb on - strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.250 kb on + strand, within MMP_RS04730 at 903.295 kb on - strand, within MMP_RS04730 at 903.301 kb on + strand, within MMP_RS04730 at 903.422 kb on + strand at 903.501 kb on - strand at 903.501 kb on - strand at 903.501 kb on - strand at 903.502 kb on + strand at 903.502 kb on + strand at 903.502 kb on + strand at 903.542 kb on - strand at 903.542 kb on - strand at 903.578 kb on + strand, within MMP_RS04735 at 903.632 kb on + strand, within MMP_RS04735 at 903.661 kb on - strand, within MMP_RS04735 at 903.661 kb on - strand, within MMP_RS04735 at 903.662 kb on + strand, within MMP_RS04735 at 903.793 kb on - strand at 903.794 kb on + strand at 903.804 kb on - strand at 903.909 kb on - strand, within MMP_RS04740 at 903.919 kb on + strand, within MMP_RS04740 at 903.954 kb on + strand, within MMP_RS04740 at 903.958 kb on + strand, within MMP_RS04740 at 903.960 kb on + strand, within MMP_RS04740 at 904.189 kb on - strand at 904.189 kb on - strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.199 kb on - strand at 904.200 kb on + strand at 904.392 kb on - strand, within MMP_RS04745 at 904.633 kb on + strand, within MMP_RS04745 at 904.635 kb on - strand, within MMP_RS04745 at 904.635 kb on - strand, within MMP_RS04745 at 904.636 kb on + strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.653 kb on - strand, within MMP_RS04745 at 904.654 kb on + strand, within MMP_RS04745 at 904.671 kb on - strand, within MMP_RS04745 at 904.672 kb on + strand, within MMP_RS04745 at 904.674 kb on - strand, within MMP_RS04745 at 904.691 kb on + strand, within MMP_RS04745 at 904.734 kb on - strand, within MMP_RS04745 at 904.734 kb on - strand, within MMP_RS04745 at 904.735 kb on + strand, within MMP_RS04745 at 904.763 kb on + strand, within MMP_RS04745 at 904.772 kb on + strand, within MMP_RS04745 at 904.801 kb on - strand, within MMP_RS04745 at 904.802 kb on + strand, within MMP_RS04745 at 904.849 kb on + strand at 904.888 kb on - strand at 904.888 kb on - strand at 904.926 kb on - strand at 904.945 kb on + strand at 904.946 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.948 kb on - strand at 904.949 kb on + strand at 904.959 kb on + strand at 905.116 kb on - strand at 905.117 kb on + strand at 905.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 902,817 - +1.9 902,873 - +1.2 902,873 - +0.0 902,897 - +0.7 902,897 - -0.9 902,897 - -3.8 902,898 + -2.5 902,898 + +0.2 902,900 - +0.1 902,902 - -0.7 902,903 + +0.7 902,903 + -0.9 902,943 - -0.2 903,018 + MMP_RS04730 0.20 +0.8 903,088 - MMP_RS04730 0.32 +0.1 903,094 + MMP_RS04730 0.34 -2.8 903,160 + MMP_RS04730 0.45 -0.8 903,171 - MMP_RS04730 0.47 +1.2 903,171 - MMP_RS04730 0.47 -3.8 903,228 + MMP_RS04730 0.57 +0.6 903,243 - MMP_RS04730 0.59 -0.2 903,244 + MMP_RS04730 0.59 +0.9 903,247 - MMP_RS04730 0.60 -1.5 903,248 + MMP_RS04730 0.60 +1.7 903,248 + MMP_RS04730 0.60 +1.2 903,248 + MMP_RS04730 0.60 -1.4 903,248 + MMP_RS04730 0.60 +0.7 903,250 + MMP_RS04730 0.60 +0.5 903,295 - MMP_RS04730 0.68 +1.3 903,301 + MMP_RS04730 0.69 -1.4 903,422 + +1.5 903,501 - +0.0 903,501 - +0.2 903,501 - +0.4 903,502 + -0.1 903,502 + +1.0 903,502 + -0.6 903,542 - +0.4 903,542 - +1.1 903,578 + MMP_RS04735 0.11 -0.1 903,632 + MMP_RS04735 0.39 -0.6 903,661 - MMP_RS04735 0.54 +0.3 903,661 - MMP_RS04735 0.54 +0.2 903,662 + MMP_RS04735 0.54 +1.0 903,793 - -0.5 903,794 + +0.3 903,804 - +0.2 903,909 - MMP_RS04740 0.31 -3.4 903,919 + MMP_RS04740 0.34 -1.9 903,954 + MMP_RS04740 0.43 +1.8 903,958 + MMP_RS04740 0.44 -0.9 903,960 + MMP_RS04740 0.44 -1.9 904,189 - +0.3 904,189 - +0.3 904,194 + -1.2 904,194 + -0.8 904,194 + -2.3 904,195 - +0.9 904,195 - +1.2 904,195 - +0.6 904,195 - +1.0 904,195 - -0.7 904,195 - +1.6 904,195 - +1.6 904,195 - -2.0 904,195 - -0.1 904,195 - +0.9 904,195 - -3.8 904,196 + -0.5 904,196 + -3.4 904,196 + -1.4 904,196 + -0.1 904,196 + +0.1 904,196 + +1.5 904,196 + -2.0 904,196 + +1.6 904,196 + -0.1 904,199 - +1.2 904,200 + -0.1 904,392 - MMP_RS04745 0.29 +0.1 904,633 + MMP_RS04745 0.63 -2.0 904,635 - MMP_RS04745 0.63 -0.7 904,635 - MMP_RS04745 0.63 -1.7 904,636 + MMP_RS04745 0.63 +2.5 904,653 - MMP_RS04745 0.66 -1.4 904,653 - MMP_RS04745 0.66 +1.3 904,653 - MMP_RS04745 0.66 -2.5 904,654 + MMP_RS04745 0.66 -3.9 904,671 - MMP_RS04745 0.68 -1.2 904,672 + MMP_RS04745 0.68 -1.4 904,674 - MMP_RS04745 0.69 +0.7 904,691 + MMP_RS04745 0.71 -0.3 904,734 - MMP_RS04745 0.77 +1.9 904,734 - MMP_RS04745 0.77 -0.2 904,735 + MMP_RS04745 0.77 -1.1 904,763 + MMP_RS04745 0.81 +1.5 904,772 + MMP_RS04745 0.82 +0.6 904,801 - MMP_RS04745 0.87 +1.0 904,802 + MMP_RS04745 0.87 -0.8 904,849 + +0.3 904,888 - -1.9 904,888 - -0.6 904,926 - +0.1 904,945 + +0.4 904,946 - -2.0 904,948 - -1.8 904,948 - -0.5 904,948 - -0.7 904,948 - -2.1 904,949 + +2.2 904,959 + +0.3 905,116 - +0.5 905,117 + -1.9 905,119 + -0.9
Or see this region's nucleotide sequence