Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04685

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
896,414	+				-0.1
896,504	+				+1.8
896,575	+				-1.0
897,237	-				-1.0
897,265	+				-1.3
897,270	+				-1.6
897,271	-				-0.2
897,271	-				-0.6
897,272	+				-1.8
897,316	-				-1.1
897,360	-				-0.6
897,364	+				-1.6
897,426	+		MMP_RS04685	0.11	-1.9
897,426	+		MMP_RS04685	0.11	-1.3
897,429	+		MMP_RS04685	0.12	-1.2
897,432	+		MMP_RS04685	0.12	-2.2
897,455	-		MMP_RS04685	0.18	-3.1
897,577	+		MMP_RS04685	0.49	-1.1
897,631	-		MMP_RS04685	0.63	-1.4
897,897	-		MMP_RS04690	0.48	+0.8
897,908	-		MMP_RS04690	0.53	+0.7
897,914	-		MMP_RS04690	0.56	-0.6
897,953	+		MMP_RS04690	0.73	-0.1
898,001	-				-0.8
898,001	-				+1.8
898,043	-				+1.0
898,049	-				-1.1
898,049	-				+1.1
898,049	-				-1.8
898,050	+				-1.1
898,050	+				+0.1
898,051	-				-1.2
898,051	-				+1.9
898,051	-				+0.3
898,054	+				+1.3
898,069	-				+0.9
898,070	+				+1.0
898,075	-				+1.4
898,075	-				+1.4
898,079	-				-0.2
898,079	-				+1.2
898,079	-				-1.2
898,080	+				+0.7
898,080	+				-2.1
898,082	-				+0.6
898,098	-				+0.1
898,099	+				+0.1
898,099	+				+0.0
898,129	-		MMP_RS09010	0.17	-1.7
898,130	+		MMP_RS09010	0.18	-0.4
898,130	+		MMP_RS09010	0.18	+0.2
898,130	+		MMP_RS09010	0.18	-0.7
898,139	-		MMP_RS09010	0.23	-2.0
898,139	-		MMP_RS09010	0.23	-0.1
898,140	+		MMP_RS09010	0.24	+1.1
898,140	+		MMP_RS09010	0.24	-1.4
898,165	+		MMP_RS09010	0.40	+0.1
898,237	-		MMP_RS09010	0.85	+1.2
898,679	-		MMP_RS04695	0.38	+0.3