Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04495

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04485 and MMP_RS04490 are separated by 149 nucleotidesMMP_RS04490 and MMP_RS04495 are separated by 8 nucleotidesMMP_RS04495 and MMP_RS04500 are separated by 57 nucleotides MMP_RS04485: MMP_RS04485 - putative beta-lysine N-acetyltransferase, at 853,539 to 854,363 _RS04485 MMP_RS04490: MMP_RS04490 - CBS domain-containing protein, at 854,513 to 854,989 _RS04490 MMP_RS04495: MMP_RS04495 - cation:proton antiporter, at 854,998 to 856,164 _RS04495 MMP_RS04500: MMP_RS04500 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 856,222 to 857,625 _RS04500 Position (kb) 854 855 856 857Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 854.007 kb on + strand, within MMP_RS04485at 854.007 kb on + strand, within MMP_RS04485at 854.008 kb on - strand, within MMP_RS04485at 854.009 kb on + strand, within MMP_RS04485at 854.011 kb on - strand, within MMP_RS04485at 854.032 kb on - strand, within MMP_RS04485at 854.097 kb on + strand, within MMP_RS04485at 854.097 kb on + strand, within MMP_RS04485at 854.167 kb on + strand, within MMP_RS04485at 854.175 kb on - strand, within MMP_RS04485at 854.177 kb on - strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.279 kb on - strand, within MMP_RS04485at 854.303 kb on - strandat 854.306 kb on - strandat 854.306 kb on - strandat 854.346 kb on - strandat 854.425 kb on + strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.430 kb on - strandat 854.431 kb on + strandat 854.431 kb on + strandat 854.481 kb on - strandat 854.486 kb on - strandat 854.492 kb on + strandat 854.492 kb on + strandat 854.619 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.639 kb on + strand, within MMP_RS04490at 854.665 kb on + strand, within MMP_RS04490at 854.698 kb on + strand, within MMP_RS04490at 854.706 kb on + strand, within MMP_RS04490at 854.756 kb on + strand, within MMP_RS04490at 854.768 kb on + strand, within MMP_RS04490at 854.837 kb on + strand, within MMP_RS04490at 854.841 kb on - strand, within MMP_RS04490at 854.849 kb on + strand, within MMP_RS04490at 854.862 kb on - strand, within MMP_RS04490at 854.862 kb on - strand, within MMP_RS04490at 854.888 kb on - strand, within MMP_RS04490at 854.926 kb on - strand, within MMP_RS04490at 854.926 kb on - strand, within MMP_RS04490at 854.927 kb on + strand, within MMP_RS04490at 854.931 kb on - strand, within MMP_RS04490at 854.965 kb on - strandat 854.965 kb on - strandat 854.966 kb on + strandat 855.040 kb on + strandat 855.041 kb on - strandat 855.066 kb on + strandat 855.230 kb on - strand, within MMP_RS04495at 855.262 kb on + strand, within MMP_RS04495at 855.540 kb on + strand, within MMP_RS04495at 855.548 kb on - strand, within MMP_RS04495at 855.586 kb on - strand, within MMP_RS04495at 855.825 kb on + strand, within MMP_RS04495at 855.835 kb on - strand, within MMP_RS04495at 855.857 kb on - strand, within MMP_RS04495at 855.857 kb on - strand, within MMP_RS04495at 855.887 kb on - strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.911 kb on - strand, within MMP_RS04495at 856.023 kb on + strand, within MMP_RS04495at 856.114 kb on + strandat 856.128 kb on - strandat 856.128 kb on - strandat 856.129 kb on + strandat 856.130 kb on - strandat 856.131 kb on + strandat 856.166 kb on + strandat 856.167 kb on - strandat 856.167 kb on - strandat 856.167 kb on - strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.170 kb on - strandat 856.170 kb on - strandat 856.171 kb on + strandat 856.171 kb on + strandat 856.173 kb on + strandat 856.173 kb on + strandat 856.241 kb on + strandat 856.350 kb on + strandat 856.397 kb on - strand, within MMP_RS04500at 856.401 kb on - strand, within MMP_RS04500at 856.402 kb on + strand, within MMP_RS04500at 856.457 kb on - strand, within MMP_RS04500at 856.540 kb on - strand, within MMP_RS04500at 856.600 kb on - strand, within MMP_RS04500at 856.600 kb on - strand, within MMP_RS04500at 856.677 kb on + strand, within MMP_RS04500at 856.678 kb on - strand, within MMP_RS04500at 856.726 kb on + strand, within MMP_RS04500at 856.745 kb on + strand, within MMP_RS04500at 856.763 kb on + strand, within MMP_RS04500at 856.763 kb on + strand, within MMP_RS04500at 856.771 kb on - strand, within MMP_RS04500at 856.840 kb on - strand, within MMP_RS04500at 856.841 kb on + strand, within MMP_RS04500at 856.842 kb on - strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.845 kb on - strand, within MMP_RS04500at 856.845 kb on - strand, within MMP_RS04500at 856.905 kb on - strand, within MMP_RS04500at 856.906 kb on + strand, within MMP_RS04500at 856.933 kb on - strand, within MMP_RS04500at 856.933 kb on - strand, within MMP_RS04500at 856.949 kb on + strand, within MMP_RS04500at 856.963 kb on + strand, within MMP_RS04500at 857.048 kb on - strand, within MMP_RS04500at 857.066 kb on - strand, within MMP_RS04500

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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854,007 + MMP_RS04485 0.57 +0.9
854,007 + MMP_RS04485 0.57 -0.8
854,008 - MMP_RS04485 0.57 +0.0
854,009 + MMP_RS04485 0.57 +1.3
854,011 - MMP_RS04485 0.57 +0.2
854,032 - MMP_RS04485 0.60 +0.3
854,097 + MMP_RS04485 0.68 +0.8
854,097 + MMP_RS04485 0.68 +0.7
854,167 + MMP_RS04485 0.76 -2.0
854,175 - MMP_RS04485 0.77 +0.8
854,177 - MMP_RS04485 0.77 +0.2
854,178 + MMP_RS04485 0.77 -0.8
854,178 + MMP_RS04485 0.77 +1.4
854,178 + MMP_RS04485 0.77 -1.3
854,178 + MMP_RS04485 0.77 +0.6
854,178 + MMP_RS04485 0.77 +1.5
854,279 - MMP_RS04485 0.90 -1.2
854,303 - -0.1
854,306 - +1.0
854,306 - -1.7
854,346 - -1.1
854,425 + +1.4
854,428 - +0.7
854,428 - +1.2
854,428 - +0.7
854,428 - -3.4
854,429 + -1.0
854,429 + +1.9
854,429 + +0.8
854,429 + -1.0
854,429 + -3.3
854,429 + +1.1
854,430 - -1.5
854,431 + -2.0
854,431 + -4.1
854,481 - -0.3
854,486 - +0.5
854,492 + -0.2
854,492 + -0.5
854,619 - MMP_RS04490 0.22 +0.8
854,638 - MMP_RS04490 0.26 +0.6
854,638 - MMP_RS04490 0.26 -0.4
854,638 - MMP_RS04490 0.26 +1.1
854,638 - MMP_RS04490 0.26 -2.0
854,638 - MMP_RS04490 0.26 +0.2
854,639 + MMP_RS04490 0.26 +2.0
854,665 + MMP_RS04490 0.32 -3.6
854,698 + MMP_RS04490 0.39 +0.5
854,706 + MMP_RS04490 0.40 +0.8
854,756 + MMP_RS04490 0.51 +2.0
854,768 + MMP_RS04490 0.53 -0.3
854,837 + MMP_RS04490 0.68 -1.4
854,841 - MMP_RS04490 0.69 +0.7
854,849 + MMP_RS04490 0.70 -2.6
854,862 - MMP_RS04490 0.73 +1.0
854,862 - MMP_RS04490 0.73 -4.8
854,888 - MMP_RS04490 0.79 +0.2
854,926 - MMP_RS04490 0.87 +1.7
854,926 - MMP_RS04490 0.87 +0.3
854,927 + MMP_RS04490 0.87 +1.0
854,931 - MMP_RS04490 0.88 +0.9
854,965 - -1.8
854,965 - +2.5
854,966 + +0.5
855,040 + +0.4
855,041 - -1.2
855,066 + -0.0
855,230 - MMP_RS04495 0.20 +1.3
855,262 + MMP_RS04495 0.23 -0.5
855,540 + MMP_RS04495 0.46 +0.4
855,548 - MMP_RS04495 0.47 +1.0
855,586 - MMP_RS04495 0.50 +0.2
855,825 + MMP_RS04495 0.71 +0.4
855,835 - MMP_RS04495 0.72 -1.1
855,857 - MMP_RS04495 0.74 +0.7
855,857 - MMP_RS04495 0.74 -1.8
855,887 - MMP_RS04495 0.76 +0.9
855,888 + MMP_RS04495 0.76 +0.4
855,888 + MMP_RS04495 0.76 +0.5
855,888 + MMP_RS04495 0.76 -0.3
855,911 - MMP_RS04495 0.78 -0.7
856,023 + MMP_RS04495 0.88 -0.3
856,114 + +0.0
856,128 - +1.0
856,128 - +0.5
856,129 + -2.0
856,130 - -3.4
856,131 + +1.2
856,166 + -1.9
856,167 - +1.3
856,167 - -0.7
856,167 - -0.2
856,168 + -2.2
856,168 + +0.0
856,168 + +0.4
856,168 + +0.4
856,170 - +0.8
856,170 - -1.3
856,171 + -1.4
856,171 + -1.6
856,173 + -3.6
856,173 + +0.3
856,241 + +0.9
856,350 + -0.2
856,397 - MMP_RS04500 0.12 +1.3
856,401 - MMP_RS04500 0.13 -1.4
856,402 + MMP_RS04500 0.13 -1.4
856,457 - MMP_RS04500 0.17 +0.0
856,540 - MMP_RS04500 0.23 -0.7
856,600 - MMP_RS04500 0.27 -1.7
856,600 - MMP_RS04500 0.27 +0.5
856,677 + MMP_RS04500 0.32 -0.7
856,678 - MMP_RS04500 0.32 -0.5
856,726 + MMP_RS04500 0.36 +0.7
856,745 + MMP_RS04500 0.37 -0.7
856,763 + MMP_RS04500 0.39 -0.1
856,763 + MMP_RS04500 0.39 +0.7
856,771 - MMP_RS04500 0.39 +0.7
856,840 - MMP_RS04500 0.44 +0.9
856,841 + MMP_RS04500 0.44 +0.4
856,842 - MMP_RS04500 0.44 -0.5
856,843 + MMP_RS04500 0.44 +1.5
856,843 + MMP_RS04500 0.44 -0.3
856,843 + MMP_RS04500 0.44 +0.4
856,843 + MMP_RS04500 0.44 +0.4
856,843 + MMP_RS04500 0.44 -2.3
856,845 - MMP_RS04500 0.44 -1.3
856,845 - MMP_RS04500 0.44 +0.6
856,905 - MMP_RS04500 0.49 +1.1
856,906 + MMP_RS04500 0.49 -1.7
856,933 - MMP_RS04500 0.51 -0.7
856,933 - MMP_RS04500 0.51 -0.2
856,949 + MMP_RS04500 0.52 +1.5
856,963 + MMP_RS04500 0.53 +1.2
857,048 - MMP_RS04500 0.59 -0.5
857,066 - MMP_RS04500 0.60 -2.4

Or see this region's nucleotide sequence