Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04465

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04460 and MMP_RS04465 are separated by 22 nucleotidesMMP_RS04465 and MMP_RS04470 are separated by 17 nucleotides MMP_RS04460: MMP_RS04460 - nitrogenase molybdenum-iron protein subunit beta, at 847,128 to 848,516 _RS04460 MMP_RS04465: MMP_RS04465 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 848,539 to 849,981 _RS04465 MMP_RS04470: MMP_RS04470 - nitrogenase, at 849,999 to 851,375 _RS04470 Position (kb) 848 849 850Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 847.550 kb on - strand, within MMP_RS04460at 847.551 kb on + strand, within MMP_RS04460at 847.676 kb on + strand, within MMP_RS04460at 847.706 kb on - strand, within MMP_RS04460at 847.706 kb on - strand, within MMP_RS04460at 847.733 kb on - strand, within MMP_RS04460at 847.733 kb on - strand, within MMP_RS04460at 847.738 kb on - strand, within MMP_RS04460at 847.739 kb on + strand, within MMP_RS04460at 847.739 kb on + strand, within MMP_RS04460at 847.743 kb on + strand, within MMP_RS04460at 847.748 kb on - strand, within MMP_RS04460at 847.804 kb on + strand, within MMP_RS04460at 847.806 kb on - strand, within MMP_RS04460at 847.862 kb on - strand, within MMP_RS04460at 847.877 kb on - strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.881 kb on - strand, within MMP_RS04460at 847.882 kb on + strand, within MMP_RS04460at 847.917 kb on - strand, within MMP_RS04460at 848.039 kb on - strand, within MMP_RS04460at 848.040 kb on + strand, within MMP_RS04460at 848.076 kb on - strand, within MMP_RS04460at 848.076 kb on - strand, within MMP_RS04460at 848.080 kb on - strand, within MMP_RS04460at 848.081 kb on + strand, within MMP_RS04460at 848.081 kb on + strand, within MMP_RS04460at 848.103 kb on - strand, within MMP_RS04460at 848.119 kb on - strand, within MMP_RS04460at 848.120 kb on + strand, within MMP_RS04460at 848.143 kb on - strand, within MMP_RS04460at 848.174 kb on + strand, within MMP_RS04460at 848.196 kb on - strand, within MMP_RS04460at 848.269 kb on - strand, within MMP_RS04460at 848.278 kb on - strand, within MMP_RS04460at 848.278 kb on - strand, within MMP_RS04460at 848.278 kb on - strand, within MMP_RS04460at 848.278 kb on - strand, within MMP_RS04460at 848.481 kb on - strandat 848.514 kb on - strandat 848.515 kb on + strandat 848.525 kb on - strandat 848.535 kb on - strandat 848.536 kb on + strandat 848.538 kb on - strandat 848.556 kb on - strandat 848.606 kb on - strandat 848.764 kb on - strand, within MMP_RS04465at 848.787 kb on + strand, within MMP_RS04465at 848.808 kb on + strand, within MMP_RS04465at 848.865 kb on - strand, within MMP_RS04465at 848.865 kb on - strand, within MMP_RS04465at 848.931 kb on + strand, within MMP_RS04465at 848.954 kb on + strand, within MMP_RS04465at 848.976 kb on - strand, within MMP_RS04465at 849.013 kb on + strand, within MMP_RS04465at 849.270 kb on + strand, within MMP_RS04465at 849.361 kb on + strand, within MMP_RS04465at 849.363 kb on + strand, within MMP_RS04465at 849.388 kb on - strand, within MMP_RS04465at 849.463 kb on + strand, within MMP_RS04465at 849.555 kb on - strand, within MMP_RS04465at 849.594 kb on - strand, within MMP_RS04465at 849.595 kb on + strand, within MMP_RS04465at 849.609 kb on + strand, within MMP_RS04465at 849.610 kb on - strand, within MMP_RS04465at 849.610 kb on - strand, within MMP_RS04465at 849.642 kb on + strand, within MMP_RS04465at 849.673 kb on + strand, within MMP_RS04465at 849.746 kb on - strand, within MMP_RS04465at 849.746 kb on - strand, within MMP_RS04465at 849.747 kb on + strand, within MMP_RS04465at 849.747 kb on + strand, within MMP_RS04465at 849.779 kb on - strand, within MMP_RS04465at 849.779 kb on - strand, within MMP_RS04465at 849.780 kb on + strand, within MMP_RS04465at 849.810 kb on + strand, within MMP_RS04465at 849.810 kb on + strand, within MMP_RS04465at 849.810 kb on + strand, within MMP_RS04465at 849.812 kb on - strand, within MMP_RS04465at 849.812 kb on - strand, within MMP_RS04465at 849.935 kb on - strandat 849.935 kb on - strandat 849.935 kb on - strandat 849.936 kb on + strandat 849.996 kb on + strandat 849.999 kb on + strandat 850.061 kb on + strandat 850.126 kb on + strandat 850.126 kb on + strandat 850.204 kb on - strand, within MMP_RS04470at 850.207 kb on - strand, within MMP_RS04470at 850.207 kb on - strand, within MMP_RS04470at 850.270 kb on - strand, within MMP_RS04470at 850.283 kb on - strand, within MMP_RS04470at 850.284 kb on + strand, within MMP_RS04470at 850.284 kb on + strand, within MMP_RS04470at 850.360 kb on - strand, within MMP_RS04470at 850.394 kb on - strand, within MMP_RS04470at 850.395 kb on + strand, within MMP_RS04470at 850.395 kb on + strand, within MMP_RS04470at 850.395 kb on + strand, within MMP_RS04470at 850.400 kb on - strand, within MMP_RS04470at 850.401 kb on + strand, within MMP_RS04470at 850.408 kb on - strand, within MMP_RS04470at 850.408 kb on - strand, within MMP_RS04470at 850.408 kb on - strand, within MMP_RS04470at 850.409 kb on + strand, within MMP_RS04470at 850.409 kb on + strand, within MMP_RS04470at 850.480 kb on - strand, within MMP_RS04470at 850.481 kb on + strand, within MMP_RS04470at 850.553 kb on + strand, within MMP_RS04470at 850.562 kb on + strand, within MMP_RS04470at 850.586 kb on - strand, within MMP_RS04470at 850.587 kb on + strand, within MMP_RS04470at 850.587 kb on + strand, within MMP_RS04470at 850.637 kb on - strand, within MMP_RS04470at 850.805 kb on - strand, within MMP_RS04470at 850.838 kb on + strand, within MMP_RS04470at 850.841 kb on - strand, within MMP_RS04470at 850.841 kb on - strand, within MMP_RS04470at 850.934 kb on + strand, within MMP_RS04470

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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847,550 - MMP_RS04460 0.30 -1.6
847,551 + MMP_RS04460 0.30 -0.6
847,676 + MMP_RS04460 0.39 +2.0
847,706 - MMP_RS04460 0.42 +1.3
847,706 - MMP_RS04460 0.42 +0.3
847,733 - MMP_RS04460 0.44 +0.6
847,733 - MMP_RS04460 0.44 +1.7
847,738 - MMP_RS04460 0.44 +0.4
847,739 + MMP_RS04460 0.44 +0.2
847,739 + MMP_RS04460 0.44 +0.6
847,743 + MMP_RS04460 0.44 -1.5
847,748 - MMP_RS04460 0.45 -0.8
847,804 + MMP_RS04460 0.49 -4.3
847,806 - MMP_RS04460 0.49 +1.3
847,862 - MMP_RS04460 0.53 +0.1
847,877 - MMP_RS04460 0.54 -1.1
847,878 + MMP_RS04460 0.54 -2.1
847,878 + MMP_RS04460 0.54 +1.3
847,878 + MMP_RS04460 0.54 +0.9
847,878 + MMP_RS04460 0.54 -0.3
847,881 - MMP_RS04460 0.54 -0.1
847,882 + MMP_RS04460 0.54 -0.1
847,917 - MMP_RS04460 0.57 -1.6
848,039 - MMP_RS04460 0.66 +0.9
848,040 + MMP_RS04460 0.66 -1.3
848,076 - MMP_RS04460 0.68 +0.7
848,076 - MMP_RS04460 0.68 -1.0
848,080 - MMP_RS04460 0.69 -2.8
848,081 + MMP_RS04460 0.69 +0.3
848,081 + MMP_RS04460 0.69 -0.4
848,103 - MMP_RS04460 0.70 -3.0
848,119 - MMP_RS04460 0.71 -0.8
848,120 + MMP_RS04460 0.71 +0.9
848,143 - MMP_RS04460 0.73 -0.3
848,174 + MMP_RS04460 0.75 +0.7
848,196 - MMP_RS04460 0.77 -0.6
848,269 - MMP_RS04460 0.82 -1.8
848,278 - MMP_RS04460 0.83 +2.4
848,278 - MMP_RS04460 0.83 +0.4
848,278 - MMP_RS04460 0.83 -1.0
848,278 - MMP_RS04460 0.83 -1.4
848,481 - -1.0
848,514 - +0.7
848,515 + +0.2
848,525 - +1.7
848,535 - -1.6
848,536 + -3.2
848,538 - -0.1
848,556 - +0.0
848,606 - +1.5
848,764 - MMP_RS04465 0.16 -3.4
848,787 + MMP_RS04465 0.17 +0.8
848,808 + MMP_RS04465 0.19 -1.5
848,865 - MMP_RS04465 0.23 +0.1
848,865 - MMP_RS04465 0.23 +1.0
848,931 + MMP_RS04465 0.27 -2.6
848,954 + MMP_RS04465 0.29 -0.5
848,976 - MMP_RS04465 0.30 -0.5
849,013 + MMP_RS04465 0.33 +0.5
849,270 + MMP_RS04465 0.51 +0.5
849,361 + MMP_RS04465 0.57 -1.5
849,363 + MMP_RS04465 0.57 -0.7
849,388 - MMP_RS04465 0.59 -0.5
849,463 + MMP_RS04465 0.64 -1.2
849,555 - MMP_RS04465 0.70 -0.1
849,594 - MMP_RS04465 0.73 +1.2
849,595 + MMP_RS04465 0.73 +0.5
849,609 + MMP_RS04465 0.74 -0.4
849,610 - MMP_RS04465 0.74 -2.3
849,610 - MMP_RS04465 0.74 -0.8
849,642 + MMP_RS04465 0.76 +0.8
849,673 + MMP_RS04465 0.79 -0.9
849,746 - MMP_RS04465 0.84 +1.1
849,746 - MMP_RS04465 0.84 +1.6
849,747 + MMP_RS04465 0.84 -1.4
849,747 + MMP_RS04465 0.84 +1.2
849,779 - MMP_RS04465 0.86 +0.1
849,779 - MMP_RS04465 0.86 -0.9
849,780 + MMP_RS04465 0.86 +0.2
849,810 + MMP_RS04465 0.88 +0.8
849,810 + MMP_RS04465 0.88 -1.4
849,810 + MMP_RS04465 0.88 +1.1
849,812 - MMP_RS04465 0.88 -0.4
849,812 - MMP_RS04465 0.88 -1.0
849,935 - +0.9
849,935 - +0.9
849,935 - -0.7
849,936 + -3.0
849,996 + +0.9
849,999 + +1.1
850,061 + +0.1
850,126 + -3.2
850,126 + -1.7
850,204 - MMP_RS04470 0.15 -0.4
850,207 - MMP_RS04470 0.15 +0.2
850,207 - MMP_RS04470 0.15 -1.3
850,270 - MMP_RS04470 0.20 -4.9
850,283 - MMP_RS04470 0.21 +1.6
850,284 + MMP_RS04470 0.21 +1.3
850,284 + MMP_RS04470 0.21 -1.0
850,360 - MMP_RS04470 0.26 +1.6
850,394 - MMP_RS04470 0.29 -1.4
850,395 + MMP_RS04470 0.29 +0.6
850,395 + MMP_RS04470 0.29 -2.6
850,395 + MMP_RS04470 0.29 -3.0
850,400 - MMP_RS04470 0.29 -0.4
850,401 + MMP_RS04470 0.29 +0.7
850,408 - MMP_RS04470 0.30 -2.3
850,408 - MMP_RS04470 0.30 +0.1
850,408 - MMP_RS04470 0.30 -0.2
850,409 + MMP_RS04470 0.30 -0.5
850,409 + MMP_RS04470 0.30 -1.0
850,480 - MMP_RS04470 0.35 +0.0
850,481 + MMP_RS04470 0.35 -1.5
850,553 + MMP_RS04470 0.40 -1.9
850,562 + MMP_RS04470 0.41 -4.3
850,586 - MMP_RS04470 0.43 -1.5
850,587 + MMP_RS04470 0.43 +0.5
850,587 + MMP_RS04470 0.43 +1.2
850,637 - MMP_RS04470 0.46 -2.9
850,805 - MMP_RS04470 0.59 +1.6
850,838 + MMP_RS04470 0.61 -0.5
850,841 - MMP_RS04470 0.61 +0.8
850,841 - MMP_RS04470 0.61 +0.2
850,934 + MMP_RS04470 0.68 +2.1

Or see this region's nucleotide sequence