Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04460

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04455 and MMP_RS04460 overlap by 8 nucleotidesMMP_RS04460 and MMP_RS04465 are separated by 22 nucleotides MMP_RS04455: MMP_RS04455 - nitrogenase subunit alpha, at 845,702 to 847,135 _RS04455 MMP_RS04460: MMP_RS04460 - nitrogenase molybdenum-iron protein subunit beta, at 847,128 to 848,516 _RS04460 MMP_RS04465: MMP_RS04465 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 848,539 to 849,981 _RS04465 Position (kb) 847 848 849Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 846.131 kb on - strand, within MMP_RS04455at 846.131 kb on - strand, within MMP_RS04455at 846.132 kb on + strand, within MMP_RS04455at 846.148 kb on - strand, within MMP_RS04455at 846.188 kb on + strand, within MMP_RS04455at 846.284 kb on - strand, within MMP_RS04455at 846.362 kb on - strand, within MMP_RS04455at 846.362 kb on - strand, within MMP_RS04455at 846.362 kb on - strand, within MMP_RS04455at 846.363 kb on + strand, within MMP_RS04455at 846.363 kb on + strand, within MMP_RS04455at 846.365 kb on + strand, within MMP_RS04455at 846.365 kb on + strand, within MMP_RS04455at 846.365 kb on + strand, within MMP_RS04455at 846.365 kb on + strand, within MMP_RS04455at 846.380 kb on - strand, within MMP_RS04455at 846.399 kb on + strand, within MMP_RS04455at 846.409 kb on - strand, within MMP_RS04455at 846.487 kb on + strand, within MMP_RS04455at 846.496 kb on + strand, within MMP_RS04455at 846.518 kb on - strand, within MMP_RS04455at 846.519 kb on + strand, within MMP_RS04455at 846.519 kb on + strand, within MMP_RS04455at 846.522 kb on - strand, within MMP_RS04455at 846.617 kb on + strand, within MMP_RS04455at 846.695 kb on - strand, within MMP_RS04455at 846.715 kb on - strand, within MMP_RS04455at 846.779 kb on - strand, within MMP_RS04455at 846.783 kb on - strand, within MMP_RS04455at 846.784 kb on + strand, within MMP_RS04455at 846.795 kb on - strand, within MMP_RS04455at 846.795 kb on - strand, within MMP_RS04455at 846.796 kb on + strand, within MMP_RS04455at 846.796 kb on + strand, within MMP_RS04455at 846.796 kb on + strand, within MMP_RS04455at 846.796 kb on + strand, within MMP_RS04455at 846.798 kb on - strand, within MMP_RS04455at 846.975 kb on - strand, within MMP_RS04455at 846.996 kb on - strandat 846.997 kb on + strandat 847.057 kb on - strandat 847.057 kb on - strandat 847.058 kb on + strandat 847.059 kb on - strandat 847.060 kb on + strandat 847.062 kb on + strandat 847.073 kb on - strandat 847.073 kb on - strandat 847.125 kb on - strandat 847.138 kb on - strandat 847.198 kb on - strandat 847.244 kb on + strandat 847.244 kb on + strandat 847.302 kb on + strand, within MMP_RS04460at 847.394 kb on + strand, within MMP_RS04460at 847.550 kb on - strand, within MMP_RS04460at 847.551 kb on + strand, within MMP_RS04460at 847.676 kb on + strand, within MMP_RS04460at 847.706 kb on - strand, within MMP_RS04460at 847.706 kb on - strand, within MMP_RS04460at 847.733 kb on - strand, within MMP_RS04460at 847.733 kb on - strand, within MMP_RS04460at 847.738 kb on - strand, within MMP_RS04460at 847.739 kb on + strand, within MMP_RS04460at 847.739 kb on + strand, within MMP_RS04460at 847.743 kb on + strand, within MMP_RS04460at 847.748 kb on - strand, within MMP_RS04460at 847.804 kb on + strand, within MMP_RS04460at 847.806 kb on - strand, within MMP_RS04460at 847.862 kb on - strand, within MMP_RS04460at 847.877 kb on - strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.878 kb on + strand, within MMP_RS04460at 847.881 kb on - strand, within MMP_RS04460at 847.882 kb on + strand, within MMP_RS04460at 847.917 kb on - strand, within MMP_RS04460at 848.039 kb on - strand, within MMP_RS04460at 848.040 kb on + strand, within MMP_RS04460at 848.076 kb on - strand, within MMP_RS04460at 848.076 kb on - strand, within MMP_RS04460at 848.080 kb on - strand, within MMP_RS04460at 848.081 kb on + strand, within MMP_RS04460at 848.081 kb on + strand, within MMP_RS04460at 848.103 kb on - strand, within MMP_RS04460at 848.119 kb on - strand, within MMP_RS04460at 848.120 kb on + strand, within MMP_RS04460at 848.143 kb on - strand, within MMP_RS04460at 848.174 kb on + strand, within MMP_RS04460at 848.196 kb on - strand, within MMP_RS04460at 848.269 kb on - strand, within MMP_RS04460at 848.278 kb on - strand, within MMP_RS04460at 848.278 kb on - strand, within MMP_RS04460at 848.278 kb on - strand, within MMP_RS04460at 848.278 kb on - strand, within MMP_RS04460at 848.481 kb on - strandat 848.514 kb on - strandat 848.515 kb on + strandat 848.525 kb on - strandat 848.535 kb on - strandat 848.536 kb on + strandat 848.538 kb on - strandat 848.556 kb on - strandat 848.606 kb on - strandat 848.764 kb on - strand, within MMP_RS04465at 848.787 kb on + strand, within MMP_RS04465at 848.808 kb on + strand, within MMP_RS04465at 848.865 kb on - strand, within MMP_RS04465at 848.865 kb on - strand, within MMP_RS04465at 848.931 kb on + strand, within MMP_RS04465at 848.954 kb on + strand, within MMP_RS04465at 848.976 kb on - strand, within MMP_RS04465at 849.013 kb on + strand, within MMP_RS04465at 849.270 kb on + strand, within MMP_RS04465at 849.361 kb on + strand, within MMP_RS04465at 849.363 kb on + strand, within MMP_RS04465at 849.388 kb on - strand, within MMP_RS04465at 849.463 kb on + strand, within MMP_RS04465

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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846,131 - MMP_RS04455 0.30 +1.9
846,131 - MMP_RS04455 0.30 -0.2
846,132 + MMP_RS04455 0.30 -1.3
846,148 - MMP_RS04455 0.31 +1.0
846,188 + MMP_RS04455 0.34 +0.7
846,284 - MMP_RS04455 0.41 +1.4
846,362 - MMP_RS04455 0.46 -1.8
846,362 - MMP_RS04455 0.46 +1.2
846,362 - MMP_RS04455 0.46 -0.9
846,363 + MMP_RS04455 0.46 -0.1
846,363 + MMP_RS04455 0.46 -2.6
846,365 + MMP_RS04455 0.46 -0.2
846,365 + MMP_RS04455 0.46 -0.6
846,365 + MMP_RS04455 0.46 -0.6
846,365 + MMP_RS04455 0.46 +1.3
846,380 - MMP_RS04455 0.47 -0.2
846,399 + MMP_RS04455 0.49 -0.0
846,409 - MMP_RS04455 0.49 +1.6
846,487 + MMP_RS04455 0.55 -2.1
846,496 + MMP_RS04455 0.55 +1.6
846,518 - MMP_RS04455 0.57 -1.8
846,519 + MMP_RS04455 0.57 +0.7
846,519 + MMP_RS04455 0.57 +1.4
846,522 - MMP_RS04455 0.57 -0.3
846,617 + MMP_RS04455 0.64 +0.6
846,695 - MMP_RS04455 0.69 -0.0
846,715 - MMP_RS04455 0.71 -3.0
846,779 - MMP_RS04455 0.75 +1.3
846,783 - MMP_RS04455 0.75 +0.4
846,784 + MMP_RS04455 0.75 -5.2
846,795 - MMP_RS04455 0.76 -0.9
846,795 - MMP_RS04455 0.76 +0.9
846,796 + MMP_RS04455 0.76 +1.7
846,796 + MMP_RS04455 0.76 -0.1
846,796 + MMP_RS04455 0.76 -0.6
846,796 + MMP_RS04455 0.76 +0.8
846,798 - MMP_RS04455 0.76 +0.7
846,975 - MMP_RS04455 0.89 +0.2
846,996 - +0.6
846,997 + -0.9
847,057 - +0.7
847,057 - -0.2
847,058 + +0.5
847,059 - +0.8
847,060 + -2.6
847,062 + -2.0
847,073 - +1.3
847,073 - +1.0
847,125 - +0.4
847,138 - +1.1
847,198 - -1.9
847,244 + +1.3
847,244 + +0.2
847,302 + MMP_RS04460 0.13 -0.8
847,394 + MMP_RS04460 0.19 +0.2
847,550 - MMP_RS04460 0.30 -1.6
847,551 + MMP_RS04460 0.30 -0.6
847,676 + MMP_RS04460 0.39 +2.0
847,706 - MMP_RS04460 0.42 +1.3
847,706 - MMP_RS04460 0.42 +0.3
847,733 - MMP_RS04460 0.44 +0.6
847,733 - MMP_RS04460 0.44 +1.7
847,738 - MMP_RS04460 0.44 +0.4
847,739 + MMP_RS04460 0.44 +0.2
847,739 + MMP_RS04460 0.44 +0.6
847,743 + MMP_RS04460 0.44 -1.5
847,748 - MMP_RS04460 0.45 -0.8
847,804 + MMP_RS04460 0.49 -4.3
847,806 - MMP_RS04460 0.49 +1.3
847,862 - MMP_RS04460 0.53 +0.1
847,877 - MMP_RS04460 0.54 -1.1
847,878 + MMP_RS04460 0.54 -2.1
847,878 + MMP_RS04460 0.54 +1.3
847,878 + MMP_RS04460 0.54 +0.9
847,878 + MMP_RS04460 0.54 -0.3
847,881 - MMP_RS04460 0.54 -0.1
847,882 + MMP_RS04460 0.54 -0.1
847,917 - MMP_RS04460 0.57 -1.6
848,039 - MMP_RS04460 0.66 +0.9
848,040 + MMP_RS04460 0.66 -1.3
848,076 - MMP_RS04460 0.68 +0.7
848,076 - MMP_RS04460 0.68 -1.0
848,080 - MMP_RS04460 0.69 -2.8
848,081 + MMP_RS04460 0.69 +0.3
848,081 + MMP_RS04460 0.69 -0.4
848,103 - MMP_RS04460 0.70 -3.0
848,119 - MMP_RS04460 0.71 -0.8
848,120 + MMP_RS04460 0.71 +0.9
848,143 - MMP_RS04460 0.73 -0.3
848,174 + MMP_RS04460 0.75 +0.7
848,196 - MMP_RS04460 0.77 -0.6
848,269 - MMP_RS04460 0.82 -1.8
848,278 - MMP_RS04460 0.83 +2.4
848,278 - MMP_RS04460 0.83 +0.4
848,278 - MMP_RS04460 0.83 -1.0
848,278 - MMP_RS04460 0.83 -1.4
848,481 - -1.0
848,514 - +0.7
848,515 + +0.2
848,525 - +1.7
848,535 - -1.6
848,536 + -3.2
848,538 - -0.1
848,556 - +0.0
848,606 - +1.5
848,764 - MMP_RS04465 0.16 -3.4
848,787 + MMP_RS04465 0.17 +0.8
848,808 + MMP_RS04465 0.19 -1.5
848,865 - MMP_RS04465 0.23 +0.1
848,865 - MMP_RS04465 0.23 +1.0
848,931 + MMP_RS04465 0.27 -2.6
848,954 + MMP_RS04465 0.29 -0.5
848,976 - MMP_RS04465 0.30 -0.5
849,013 + MMP_RS04465 0.33 +0.5
849,270 + MMP_RS04465 0.51 +0.5
849,361 + MMP_RS04465 0.57 -1.5
849,363 + MMP_RS04465 0.57 -0.7
849,388 - MMP_RS04465 0.59 -0.5
849,463 + MMP_RS04465 0.64 -1.2

Or see this region's nucleotide sequence