Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04410 and MMP_RS04415 are separated by 82 nucleotides MMP_RS04415 and MMP_RS04420 are separated by 254 nucleotides MMP_RS04420 and MMP_RS04425 are separated by 62 nucleotides
MMP_RS04410: MMP_RS04410 - hypothetical protein, at 839,216 to 839,815
_RS04410
MMP_RS04415: MMP_RS04415 - peptide-methionine (S)-S-oxide reductase MsrA, at 839,898 to 840,371
_RS04415
MMP_RS04420: MMP_RS04420 - LysE family translocator, at 840,626 to 841,249
_RS04420
MMP_RS04425: MMP_RS04425 - APC family permease, at 841,312 to 842,565
_RS04425
Position (kb) 840
841
842 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 839.643 kb on + strand, within MMP_RS04410 at 839.663 kb on - strand, within MMP_RS04410 at 839.748 kb on - strand, within MMP_RS04410 at 839.819 kb on + strand at 839.843 kb on + strand at 839.849 kb on - strand at 839.850 kb on + strand at 839.863 kb on - strand at 839.870 kb on + strand at 839.876 kb on + strand at 839.919 kb on + strand at 839.936 kb on + strand at 839.936 kb on + strand at 840.045 kb on - strand, within MMP_RS04415 at 840.045 kb on - strand, within MMP_RS04415 at 840.046 kb on + strand, within MMP_RS04415 at 840.086 kb on + strand, within MMP_RS04415 at 840.122 kb on - strand, within MMP_RS04415 at 840.122 kb on - strand, within MMP_RS04415 at 840.123 kb on + strand, within MMP_RS04415 at 840.148 kb on + strand, within MMP_RS04415 at 840.153 kb on - strand, within MMP_RS04415 at 840.156 kb on - strand, within MMP_RS04415 at 840.157 kb on + strand, within MMP_RS04415 at 840.172 kb on + strand, within MMP_RS04415 at 840.193 kb on + strand, within MMP_RS04415 at 840.197 kb on - strand, within MMP_RS04415 at 840.360 kb on + strand at 840.362 kb on - strand at 840.392 kb on - strand at 840.393 kb on + strand at 840.422 kb on + strand at 840.458 kb on - strand at 840.463 kb on + strand at 840.463 kb on + strand at 840.485 kb on - strand at 840.486 kb on + strand at 840.487 kb on - strand at 840.489 kb on - strand at 840.490 kb on + strand at 840.490 kb on + strand at 840.501 kb on - strand at 840.502 kb on + strand at 840.502 kb on + strand at 840.510 kb on + strand at 840.520 kb on - strand at 840.582 kb on + strand at 840.590 kb on - strand at 840.590 kb on - strand at 840.590 kb on - strand at 840.590 kb on - strand at 840.591 kb on + strand at 840.595 kb on + strand at 840.599 kb on + strand at 840.637 kb on - strand at 840.650 kb on - strand at 840.676 kb on - strand at 840.676 kb on - strand at 840.677 kb on + strand at 840.677 kb on + strand at 840.699 kb on - strand, within MMP_RS04420 at 840.791 kb on + strand, within MMP_RS04420 at 840.937 kb on - strand, within MMP_RS04420 at 841.071 kb on - strand, within MMP_RS04420 at 841.155 kb on - strand, within MMP_RS04420 at 841.182 kb on + strand, within MMP_RS04420 at 841.300 kb on + strand at 841.311 kb on - strand at 841.311 kb on - strand at 841.311 kb on - strand at 841.337 kb on + strand at 841.338 kb on - strand at 841.338 kb on - strand at 841.339 kb on + strand at 841.339 kb on + strand at 841.343 kb on - strand at 841.344 kb on + strand at 841.353 kb on - strand at 841.388 kb on - strand at 841.389 kb on + strand at 841.401 kb on + strand at 841.401 kb on + strand at 841.405 kb on - strand at 841.411 kb on + strand at 841.490 kb on - strand, within MMP_RS04425 at 841.490 kb on - strand, within MMP_RS04425 at 841.532 kb on - strand, within MMP_RS04425 at 841.533 kb on + strand, within MMP_RS04425 at 841.573 kb on - strand, within MMP_RS04425 at 841.574 kb on + strand, within MMP_RS04425 at 841.576 kb on - strand, within MMP_RS04425 at 841.576 kb on - strand, within MMP_RS04425 at 841.577 kb on + strand, within MMP_RS04425 at 841.577 kb on + strand, within MMP_RS04425 at 841.577 kb on + strand, within MMP_RS04425 at 841.581 kb on + strand, within MMP_RS04425 at 841.581 kb on + strand, within MMP_RS04425 at 841.583 kb on - strand, within MMP_RS04425 at 841.584 kb on + strand, within MMP_RS04425 at 841.647 kb on + strand, within MMP_RS04425 at 841.678 kb on - strand, within MMP_RS04425 at 841.679 kb on + strand, within MMP_RS04425 at 841.692 kb on + strand, within MMP_RS04425 at 841.709 kb on - strand, within MMP_RS04425 at 841.736 kb on - strand, within MMP_RS04425 at 841.767 kb on + strand, within MMP_RS04425 at 841.773 kb on - strand, within MMP_RS04425 at 841.778 kb on - strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.847 kb on - strand, within MMP_RS04425 at 841.847 kb on - strand, within MMP_RS04425 at 841.851 kb on - strand, within MMP_RS04425 at 841.862 kb on - strand, within MMP_RS04425 at 841.863 kb on + strand, within MMP_RS04425 at 841.867 kb on - strand, within MMP_RS04425 at 841.897 kb on + strand, within MMP_RS04425 at 841.970 kb on - strand, within MMP_RS04425 at 841.971 kb on + strand, within MMP_RS04425 at 841.973 kb on - strand, within MMP_RS04425 at 841.974 kb on + strand, within MMP_RS04425 at 841.974 kb on + strand, within MMP_RS04425 at 841.980 kb on + strand, within MMP_RS04425 at 841.992 kb on - strand, within MMP_RS04425 at 841.992 kb on - strand, within MMP_RS04425 at 841.993 kb on + strand, within MMP_RS04425 at 841.994 kb on - strand, within MMP_RS04425 at 842.031 kb on + strand, within MMP_RS04425 at 842.054 kb on - strand, within MMP_RS04425 at 842.055 kb on + strand, within MMP_RS04425 at 842.081 kb on - strand, within MMP_RS04425 at 842.081 kb on - strand, within MMP_RS04425 at 842.084 kb on - strand, within MMP_RS04425 at 842.116 kb on + strand, within MMP_RS04425 at 842.116 kb on + strand, within MMP_RS04425 at 842.117 kb on - strand, within MMP_RS04425 at 842.127 kb on - strand, within MMP_RS04425 at 842.130 kb on - strand, within MMP_RS04425 at 842.244 kb on - strand, within MMP_RS04425
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 839,643 + MMP_RS04410 0.71 +1.1 839,663 - MMP_RS04410 0.74 +1.0 839,748 - MMP_RS04410 0.89 -0.4 839,819 + -2.8 839,843 + +0.8 839,849 - +0.0 839,850 + -0.1 839,863 - +0.4 839,870 + -0.0 839,876 + +1.1 839,919 + +1.2 839,936 + +1.1 839,936 + +1.2 840,045 - MMP_RS04415 0.31 -2.3 840,045 - MMP_RS04415 0.31 -0.8 840,046 + MMP_RS04415 0.31 -1.0 840,086 + MMP_RS04415 0.40 -1.0 840,122 - MMP_RS04415 0.47 +0.8 840,122 - MMP_RS04415 0.47 -0.2 840,123 + MMP_RS04415 0.47 +0.9 840,148 + MMP_RS04415 0.53 +1.6 840,153 - MMP_RS04415 0.54 -0.4 840,156 - MMP_RS04415 0.54 +1.0 840,157 + MMP_RS04415 0.55 -3.1 840,172 + MMP_RS04415 0.58 +1.0 840,193 + MMP_RS04415 0.62 -3.1 840,197 - MMP_RS04415 0.63 +1.1 840,360 + -2.9 840,362 - +0.5 840,392 - +1.2 840,393 + +0.3 840,422 + +0.1 840,458 - +1.5 840,463 + -0.9 840,463 + +0.6 840,485 - -0.2 840,486 + -0.2 840,487 - +0.7 840,489 - +0.6 840,490 + +0.4 840,490 + -3.9 840,501 - +1.5 840,502 + -3.3 840,502 + +1.6 840,510 + +0.3 840,520 - +2.2 840,582 + -0.2 840,590 - -1.0 840,590 - +1.2 840,590 - +1.7 840,590 - -2.4 840,591 + -0.0 840,595 + +1.4 840,599 + +0.8 840,637 - -0.0 840,650 - -1.8 840,676 - +0.8 840,676 - +0.9 840,677 + +0.8 840,677 + +0.2 840,699 - MMP_RS04420 0.12 -0.3 840,791 + MMP_RS04420 0.26 -0.4 840,937 - MMP_RS04420 0.50 +0.3 841,071 - MMP_RS04420 0.71 -0.8 841,155 - MMP_RS04420 0.85 -1.4 841,182 + MMP_RS04420 0.89 -0.5 841,300 + +1.9 841,311 - +1.6 841,311 - -1.1 841,311 - +1.3 841,337 + -1.0 841,338 - +1.0 841,338 - +0.1 841,339 + -0.4 841,339 + +0.4 841,343 - -0.2 841,344 + +0.1 841,353 - +0.2 841,388 - +0.8 841,389 + -1.4 841,401 + +1.6 841,401 + +0.3 841,405 - +0.8 841,411 + -1.4 841,490 - MMP_RS04425 0.14 -0.7 841,490 - MMP_RS04425 0.14 +1.9 841,532 - MMP_RS04425 0.18 +0.8 841,533 + MMP_RS04425 0.18 +1.2 841,573 - MMP_RS04425 0.21 -3.2 841,574 + MMP_RS04425 0.21 -0.3 841,576 - MMP_RS04425 0.21 +1.0 841,576 - MMP_RS04425 0.21 +0.9 841,577 + MMP_RS04425 0.21 -0.8 841,577 + MMP_RS04425 0.21 -1.7 841,577 + MMP_RS04425 0.21 +0.3 841,581 + MMP_RS04425 0.21 -0.2 841,581 + MMP_RS04425 0.21 +1.6 841,583 - MMP_RS04425 0.22 +1.2 841,584 + MMP_RS04425 0.22 -1.8 841,647 + MMP_RS04425 0.27 -3.2 841,678 - MMP_RS04425 0.29 +1.5 841,679 + MMP_RS04425 0.29 +0.8 841,692 + MMP_RS04425 0.30 +0.6 841,709 - MMP_RS04425 0.32 +1.3 841,736 - MMP_RS04425 0.34 -0.1 841,767 + MMP_RS04425 0.36 +0.4 841,773 - MMP_RS04425 0.37 +0.4 841,778 - MMP_RS04425 0.37 +1.8 841,785 + MMP_RS04425 0.38 +0.1 841,785 + MMP_RS04425 0.38 +1.3 841,785 + MMP_RS04425 0.38 +0.4 841,847 - MMP_RS04425 0.43 +0.5 841,847 - MMP_RS04425 0.43 -0.8 841,851 - MMP_RS04425 0.43 +0.3 841,862 - MMP_RS04425 0.44 +1.1 841,863 + MMP_RS04425 0.44 +1.3 841,867 - MMP_RS04425 0.44 +0.8 841,897 + MMP_RS04425 0.47 -0.1 841,970 - MMP_RS04425 0.52 -0.2 841,971 + MMP_RS04425 0.53 -0.4 841,973 - MMP_RS04425 0.53 +0.0 841,974 + MMP_RS04425 0.53 +2.1 841,974 + MMP_RS04425 0.53 -0.2 841,980 + MMP_RS04425 0.53 -0.5 841,992 - MMP_RS04425 0.54 -0.1 841,992 - MMP_RS04425 0.54 +0.5 841,993 + MMP_RS04425 0.54 +1.1 841,994 - MMP_RS04425 0.54 -1.9 842,031 + MMP_RS04425 0.57 +0.6 842,054 - MMP_RS04425 0.59 +0.5 842,055 + MMP_RS04425 0.59 -0.3 842,081 - MMP_RS04425 0.61 -1.5 842,081 - MMP_RS04425 0.61 +0.7 842,084 - MMP_RS04425 0.62 +0.7 842,116 + MMP_RS04425 0.64 -0.3 842,116 + MMP_RS04425 0.64 -2.0 842,117 - MMP_RS04425 0.64 +1.0 842,127 - MMP_RS04425 0.65 -0.3 842,130 - MMP_RS04425 0.65 +0.7 842,244 - MMP_RS04425 0.74 +1.2
Or see this region's nucleotide sequence