Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04135 and MMP_RS04140 are separated by 168 nucleotides MMP_RS04140 and MMP_RS04145 are separated by 123 nucleotides MMP_RS04145 and MMP_RS04150 are separated by 124 nucleotides
MMP_RS04135: MMP_RS04135 - DUF3737 family protein, at 785,705 to 786,652
_RS04135
MMP_RS04140: MMP_RS04140 - phospholipid methyltransferase, at 786,821 to 787,339
_RS04140
MMP_RS04145: MMP_RS04145 - hypothetical protein, at 787,463 to 787,987
_RS04145
MMP_RS04150: MMP_RS04150 - MFS transporter, at 788,112 to 789,326
_RS04150
Position (kb) 786
787
788 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 785.824 kb on + strand, within MMP_RS04135 at 785.934 kb on - strand, within MMP_RS04135 at 785.936 kb on - strand, within MMP_RS04135 at 786.041 kb on - strand, within MMP_RS04135 at 786.044 kb on + strand, within MMP_RS04135 at 786.064 kb on + strand, within MMP_RS04135 at 786.083 kb on + strand, within MMP_RS04135 at 786.086 kb on + strand, within MMP_RS04135 at 786.094 kb on + strand, within MMP_RS04135 at 786.116 kb on + strand, within MMP_RS04135 at 786.128 kb on + strand, within MMP_RS04135 at 786.128 kb on + strand, within MMP_RS04135 at 786.131 kb on + strand, within MMP_RS04135 at 786.355 kb on - strand, within MMP_RS04135 at 786.355 kb on - strand, within MMP_RS04135 at 786.356 kb on + strand, within MMP_RS04135 at 786.383 kb on - strand, within MMP_RS04135 at 786.532 kb on - strand, within MMP_RS04135 at 786.533 kb on + strand, within MMP_RS04135 at 786.701 kb on - strand at 786.730 kb on - strand at 786.747 kb on - strand at 786.773 kb on - strand at 786.774 kb on + strand at 786.790 kb on - strand at 786.791 kb on + strand at 786.852 kb on - strand at 786.856 kb on - strand at 786.860 kb on + strand at 786.873 kb on - strand, within MMP_RS04140 at 786.878 kb on + strand, within MMP_RS04140 at 786.898 kb on - strand, within MMP_RS04140 at 786.970 kb on - strand, within MMP_RS04140 at 786.970 kb on - strand, within MMP_RS04140 at 786.977 kb on + strand, within MMP_RS04140 at 786.985 kb on + strand, within MMP_RS04140 at 786.985 kb on + strand, within MMP_RS04140 at 786.986 kb on - strand, within MMP_RS04140 at 786.986 kb on - strand, within MMP_RS04140 at 786.987 kb on + strand, within MMP_RS04140 at 786.987 kb on + strand, within MMP_RS04140 at 786.987 kb on + strand, within MMP_RS04140 at 786.987 kb on + strand, within MMP_RS04140 at 786.987 kb on + strand, within MMP_RS04140 at 787.028 kb on - strand, within MMP_RS04140 at 787.038 kb on - strand, within MMP_RS04140 at 787.039 kb on + strand, within MMP_RS04140 at 787.042 kb on + strand, within MMP_RS04140 at 787.046 kb on - strand, within MMP_RS04140 at 787.046 kb on - strand, within MMP_RS04140 at 787.046 kb on - strand, within MMP_RS04140 at 787.048 kb on - strand, within MMP_RS04140 at 787.048 kb on - strand, within MMP_RS04140 at 787.049 kb on + strand, within MMP_RS04140 at 787.065 kb on - strand, within MMP_RS04140 at 787.078 kb on - strand, within MMP_RS04140 at 787.078 kb on - strand, within MMP_RS04140 at 787.078 kb on - strand, within MMP_RS04140 at 787.079 kb on + strand, within MMP_RS04140 at 787.079 kb on + strand, within MMP_RS04140 at 787.083 kb on - strand, within MMP_RS04140 at 787.088 kb on - strand, within MMP_RS04140 at 787.088 kb on - strand, within MMP_RS04140 at 787.094 kb on + strand, within MMP_RS04140 at 787.099 kb on - strand, within MMP_RS04140 at 787.129 kb on + strand, within MMP_RS04140 at 787.131 kb on + strand, within MMP_RS04140 at 787.164 kb on + strand, within MMP_RS04140 at 787.180 kb on + strand, within MMP_RS04140 at 787.180 kb on + strand, within MMP_RS04140 at 787.228 kb on + strand, within MMP_RS04140 at 787.256 kb on + strand, within MMP_RS04140 at 787.301 kb on - strand at 787.301 kb on - strand at 787.310 kb on - strand at 787.311 kb on + strand at 787.312 kb on - strand at 787.319 kb on + strand at 787.323 kb on - strand at 787.333 kb on - strand at 787.344 kb on - strand at 787.347 kb on + strand at 787.350 kb on + strand at 787.387 kb on - strand at 787.387 kb on - strand at 787.440 kb on - strand at 787.446 kb on + strand at 787.648 kb on + strand, within MMP_RS04145 at 787.940 kb on + strand at 787.991 kb on - strand at 787.991 kb on - strand at 787.992 kb on + strand at 788.069 kb on - strand at 788.069 kb on - strand at 788.070 kb on + strand at 788.070 kb on + strand at 788.070 kb on + strand at 788.070 kb on + strand at 788.070 kb on + strand at 788.071 kb on - strand at 788.071 kb on - strand at 788.071 kb on - strand at 788.072 kb on + strand at 788.078 kb on - strand at 788.108 kb on - strand at 788.138 kb on + strand at 788.225 kb on + strand at 788.242 kb on - strand, within MMP_RS04150 at 788.247 kb on + strand, within MMP_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 785,824 + MMP_RS04135 0.13 -1.2 785,934 - MMP_RS04135 0.24 -0.1 785,936 - MMP_RS04135 0.24 +2.1 786,041 - MMP_RS04135 0.35 -1.4 786,044 + MMP_RS04135 0.36 -3.8 786,064 + MMP_RS04135 0.38 +0.7 786,083 + MMP_RS04135 0.40 +0.7 786,086 + MMP_RS04135 0.40 +1.5 786,094 + MMP_RS04135 0.41 -0.6 786,116 + MMP_RS04135 0.43 -1.0 786,128 + MMP_RS04135 0.45 +1.5 786,128 + MMP_RS04135 0.45 +1.7 786,131 + MMP_RS04135 0.45 +0.7 786,355 - MMP_RS04135 0.69 +0.4 786,355 - MMP_RS04135 0.69 -0.3 786,356 + MMP_RS04135 0.69 +0.3 786,383 - MMP_RS04135 0.72 +2.0 786,532 - MMP_RS04135 0.87 +1.9 786,533 + MMP_RS04135 0.87 +0.1 786,701 - +0.7 786,730 - -2.8 786,747 - -1.0 786,773 - -0.2 786,774 + +1.3 786,790 - +2.0 786,791 + +1.9 786,852 - +0.6 786,856 - -1.0 786,860 + -4.7 786,873 - MMP_RS04140 0.10 -1.1 786,878 + MMP_RS04140 0.11 +0.5 786,898 - MMP_RS04140 0.15 +1.1 786,970 - MMP_RS04140 0.29 -0.3 786,970 - MMP_RS04140 0.29 +1.3 786,977 + MMP_RS04140 0.30 +1.3 786,985 + MMP_RS04140 0.32 +1.1 786,985 + MMP_RS04140 0.32 +1.2 786,986 - MMP_RS04140 0.32 +0.5 786,986 - MMP_RS04140 0.32 -1.4 786,987 + MMP_RS04140 0.32 +1.3 786,987 + MMP_RS04140 0.32 +1.0 786,987 + MMP_RS04140 0.32 +0.9 786,987 + MMP_RS04140 0.32 +0.7 786,987 + MMP_RS04140 0.32 +0.8 787,028 - MMP_RS04140 0.40 +1.3 787,038 - MMP_RS04140 0.42 -0.8 787,039 + MMP_RS04140 0.42 -1.7 787,042 + MMP_RS04140 0.43 +1.3 787,046 - MMP_RS04140 0.43 +0.3 787,046 - MMP_RS04140 0.43 -0.3 787,046 - MMP_RS04140 0.43 +2.2 787,048 - MMP_RS04140 0.44 +1.6 787,048 - MMP_RS04140 0.44 -0.1 787,049 + MMP_RS04140 0.44 +1.2 787,065 - MMP_RS04140 0.47 -0.1 787,078 - MMP_RS04140 0.50 -0.8 787,078 - MMP_RS04140 0.50 -0.1 787,078 - MMP_RS04140 0.50 +1.0 787,079 + MMP_RS04140 0.50 -2.0 787,079 + MMP_RS04140 0.50 +0.3 787,083 - MMP_RS04140 0.50 -0.2 787,088 - MMP_RS04140 0.51 +0.8 787,088 - MMP_RS04140 0.51 +1.1 787,094 + MMP_RS04140 0.53 +0.8 787,099 - MMP_RS04140 0.54 +0.8 787,129 + MMP_RS04140 0.59 -1.0 787,131 + MMP_RS04140 0.60 -3.5 787,164 + MMP_RS04140 0.66 -0.8 787,180 + MMP_RS04140 0.69 +0.9 787,180 + MMP_RS04140 0.69 +0.2 787,228 + MMP_RS04140 0.78 -0.7 787,256 + MMP_RS04140 0.84 -2.5 787,301 - +1.6 787,301 - +0.1 787,310 - +0.0 787,311 + -2.1 787,312 - -2.6 787,319 + +0.6 787,323 - +0.6 787,333 - +0.4 787,344 - +0.7 787,347 + -0.1 787,350 + +0.1 787,387 - -2.3 787,387 - -0.3 787,440 - +1.0 787,446 + +0.6 787,648 + MMP_RS04145 0.35 -0.3 787,940 + +0.9 787,991 - -2.3 787,991 - -1.1 787,992 + -0.6 788,069 - +0.9 788,069 - +0.2 788,070 + -0.8 788,070 + -1.6 788,070 + +1.5 788,070 + +0.2 788,070 + +1.4 788,071 - +0.6 788,071 - -1.2 788,071 - +0.3 788,072 + -1.3 788,078 - -0.9 788,108 - +1.6 788,138 + +0.1 788,225 + +0.9 788,242 - MMP_RS04150 0.11 +1.1 788,247 + MMP_RS04150 0.11 +1.2
Or see this region's nucleotide sequence