Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04120 and MMP_RS04125 are separated by 214 nucleotides MMP_RS04125 and MMP_RS04130 are separated by 102 nucleotides
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
MMP_RS04125: MMP_RS04125 - TetR/AcrR family transcriptional regulator, at 784,022 to 784,600
_RS04125
MMP_RS04130: MMP_RS04130 - alpha/beta hydrolase, at 784,703 to 785,689
_RS04130
Position (kb) 784
785 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 783.051 kb on - strand at 783.051 kb on - strand at 783.078 kb on + strand at 783.078 kb on + strand at 783.106 kb on + strand at 783.146 kb on - strand at 783.168 kb on + strand at 783.226 kb on + strand at 783.226 kb on + strand at 783.228 kb on + strand at 783.228 kb on + strand at 783.257 kb on - strand at 783.356 kb on - strand, within MMP_RS04120 at 783.418 kb on - strand, within MMP_RS04120 at 783.466 kb on - strand, within MMP_RS04120 at 783.512 kb on + strand, within MMP_RS04120 at 783.569 kb on + strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.679 kb on + strand, within MMP_RS04120 at 783.681 kb on - strand, within MMP_RS04120 at 783.687 kb on - strand, within MMP_RS04120 at 783.693 kb on + strand, within MMP_RS04120 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand at 783.850 kb on - strand at 783.850 kb on - strand at 783.855 kb on - strand at 783.859 kb on + strand at 783.859 kb on + strand at 783.861 kb on - strand at 783.866 kb on - strand at 783.866 kb on - strand at 783.904 kb on - strand at 783.921 kb on - strand at 783.969 kb on - strand at 783.969 kb on - strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.972 kb on + strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.055 kb on + strand at 784.142 kb on + strand, within MMP_RS04125 at 784.504 kb on + strand, within MMP_RS04125 at 784.513 kb on + strand, within MMP_RS04125 at 784.534 kb on - strand, within MMP_RS04125 at 784.547 kb on + strand at 784.573 kb on - strand at 784.576 kb on + strand at 784.576 kb on + strand at 784.610 kb on + strand at 784.649 kb on - strand at 784.650 kb on + strand at 784.653 kb on - strand at 784.658 kb on - strand at 784.671 kb on - strand at 784.765 kb on + strand at 784.823 kb on - strand, within MMP_RS04130 at 784.823 kb on - strand, within MMP_RS04130 at 784.823 kb on - strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.824 kb on + strand, within MMP_RS04130 at 784.844 kb on + strand, within MMP_RS04130 at 784.873 kb on + strand, within MMP_RS04130 at 784.914 kb on - strand, within MMP_RS04130 at 784.914 kb on - strand, within MMP_RS04130 at 784.970 kb on - strand, within MMP_RS04130 at 785.020 kb on + strand, within MMP_RS04130 at 785.020 kb on + strand, within MMP_RS04130 at 785.073 kb on - strand, within MMP_RS04130 at 785.074 kb on + strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.176 kb on - strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.177 kb on + strand, within MMP_RS04130 at 785.181 kb on + strand, within MMP_RS04130 at 785.185 kb on - strand, within MMP_RS04130 at 785.185 kb on - strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.186 kb on + strand, within MMP_RS04130 at 785.187 kb on - strand, within MMP_RS04130 at 785.187 kb on - strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.188 kb on + strand, within MMP_RS04130 at 785.239 kb on - strand, within MMP_RS04130 at 785.250 kb on - strand, within MMP_RS04130 at 785.301 kb on - strand, within MMP_RS04130 at 785.352 kb on - strand, within MMP_RS04130 at 785.353 kb on + strand, within MMP_RS04130 at 785.385 kb on + strand, within MMP_RS04130 at 785.409 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.474 kb on - strand, within MMP_RS04130 at 785.475 kb on + strand, within MMP_RS04130 at 785.475 kb on + strand, within MMP_RS04130 at 785.512 kb on + strand, within MMP_RS04130 at 785.537 kb on - strand, within MMP_RS04130 at 785.555 kb on - strand, within MMP_RS04130 at 785.585 kb on - strand, within MMP_RS04130 at 785.585 kb on - strand, within MMP_RS04130
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 783,051 - +0.2 783,051 - +2.2 783,078 + +1.3 783,078 + -3.5 783,106 + +0.5 783,146 - +1.1 783,168 + -0.9 783,226 + -2.3 783,226 + -0.7 783,228 + +1.5 783,228 + -1.4 783,257 - +0.1 783,356 - MMP_RS04120 0.25 +0.8 783,418 - MMP_RS04120 0.35 -2.5 783,466 - MMP_RS04120 0.43 -0.4 783,512 + MMP_RS04120 0.51 -0.2 783,569 + MMP_RS04120 0.60 -1.9 783,667 - MMP_RS04120 0.77 -0.5 783,667 - MMP_RS04120 0.77 +1.9 783,668 + MMP_RS04120 0.77 +0.9 783,668 + MMP_RS04120 0.77 +1.5 783,668 + MMP_RS04120 0.77 +1.5 783,668 + MMP_RS04120 0.77 +0.8 783,671 - MMP_RS04120 0.77 +0.4 783,671 - MMP_RS04120 0.77 -0.4 783,678 - MMP_RS04120 0.78 +1.6 783,678 - MMP_RS04120 0.78 +1.8 783,679 + MMP_RS04120 0.79 +1.2 783,681 - MMP_RS04120 0.79 -1.5 783,687 - MMP_RS04120 0.80 -0.2 783,693 + MMP_RS04120 0.81 +0.8 783,717 - MMP_RS04120 0.85 +1.2 783,759 - +0.7 783,795 - -0.4 783,800 - -0.1 783,801 + +0.4 783,819 + -0.6 783,850 - -0.5 783,850 - +1.1 783,855 - -0.1 783,859 + -0.1 783,859 + +0.0 783,861 - -0.9 783,866 - -0.2 783,866 - +0.6 783,904 - +0.6 783,921 - -0.4 783,969 - -0.3 783,969 - +1.1 783,970 + +0.4 783,970 + -0.6 783,970 + -1.4 783,972 + +1.2 784,017 - -1.6 784,017 - -1.0 784,017 - -0.8 784,018 + -1.3 784,018 + +0.2 784,018 + -4.7 784,019 - -0.8 784,019 - +0.2 784,019 - +1.2 784,020 + -2.7 784,020 + +0.4 784,020 + +0.4 784,020 + +0.0 784,020 + -4.4 784,022 + +0.6 784,022 + +0.5 784,022 + +0.1 784,055 + +0.5 784,142 + MMP_RS04125 0.21 -1.2 784,504 + MMP_RS04125 0.83 -0.3 784,513 + MMP_RS04125 0.85 -0.8 784,534 - MMP_RS04125 0.88 -0.5 784,547 + -0.3 784,573 - +0.2 784,576 + -0.1 784,576 + +1.2 784,610 + +0.7 784,649 - +1.0 784,650 + +0.6 784,653 - +0.3 784,658 - +2.2 784,671 - +0.9 784,765 + -1.7 784,823 - MMP_RS04130 0.12 +0.3 784,823 - MMP_RS04130 0.12 +0.3 784,823 - MMP_RS04130 0.12 +0.6 784,824 + MMP_RS04130 0.12 -0.0 784,824 + MMP_RS04130 0.12 +1.0 784,824 + MMP_RS04130 0.12 +0.5 784,844 + MMP_RS04130 0.14 +0.6 784,873 + MMP_RS04130 0.17 +1.2 784,914 - MMP_RS04130 0.21 +1.4 784,914 - MMP_RS04130 0.21 -0.7 784,970 - MMP_RS04130 0.27 +0.1 785,020 + MMP_RS04130 0.32 +0.3 785,020 + MMP_RS04130 0.32 +1.9 785,073 - MMP_RS04130 0.37 -0.3 785,074 + MMP_RS04130 0.38 -1.4 785,176 - MMP_RS04130 0.48 -1.8 785,176 - MMP_RS04130 0.48 -0.2 785,176 - MMP_RS04130 0.48 +1.5 785,176 - MMP_RS04130 0.48 +1.3 785,176 - MMP_RS04130 0.48 -4.4 785,177 + MMP_RS04130 0.48 -0.0 785,177 + MMP_RS04130 0.48 +0.9 785,177 + MMP_RS04130 0.48 -2.3 785,177 + MMP_RS04130 0.48 +0.5 785,177 + MMP_RS04130 0.48 +1.1 785,181 + MMP_RS04130 0.48 -2.1 785,185 - MMP_RS04130 0.49 -2.7 785,185 - MMP_RS04130 0.49 -0.2 785,186 + MMP_RS04130 0.49 +0.8 785,186 + MMP_RS04130 0.49 -2.1 785,186 + MMP_RS04130 0.49 -2.3 785,187 - MMP_RS04130 0.49 -0.1 785,187 - MMP_RS04130 0.49 +1.1 785,188 + MMP_RS04130 0.49 +0.3 785,188 + MMP_RS04130 0.49 +0.4 785,188 + MMP_RS04130 0.49 +0.3 785,239 - MMP_RS04130 0.54 -3.1 785,250 - MMP_RS04130 0.55 +1.5 785,301 - MMP_RS04130 0.61 -1.8 785,352 - MMP_RS04130 0.66 -5.2 785,353 + MMP_RS04130 0.66 -0.4 785,385 + MMP_RS04130 0.69 +1.4 785,409 - MMP_RS04130 0.72 -2.7 785,474 - MMP_RS04130 0.78 +0.2 785,474 - MMP_RS04130 0.78 +0.9 785,474 - MMP_RS04130 0.78 +1.2 785,475 + MMP_RS04130 0.78 +1.8 785,475 + MMP_RS04130 0.78 +0.0 785,512 + MMP_RS04130 0.82 +1.4 785,537 - MMP_RS04130 0.84 -0.4 785,555 - MMP_RS04130 0.86 +0.3 785,585 - MMP_RS04130 0.89 +0.9 785,585 - MMP_RS04130 0.89 +0.5
Or see this region's nucleotide sequence