Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04025 and MMP_RS04030 are separated by 126 nucleotides MMP_RS04030 and MMP_RS04035 are separated by 192 nucleotides MMP_RS04035 and MMP_RS04040 are separated by 5 nucleotides MMP_RS04040 and MMP_RS04045 are separated by 11 nucleotides
MMP_RS04025: MMP_RS04025 - ATPase AAA, at 763,723 to 765,075
_RS04025
MMP_RS04030: MMP_RS04030 - hypothetical protein, at 765,202 to 765,603
_RS04030
MMP_RS04035: MMP_RS04035 - hypothetical protein, at 765,796 to 766,236
_RS04035
MMP_RS04040: MMP_RS04040 - hypothetical protein, at 766,242 to 766,721
_RS04040
MMP_RS04045: MMP_RS04045 - hypothetical protein, at 766,733 to 767,473
_RS04045
Position (kb) 765
766
767 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 764.871 kb on - strand, within MMP_RS04025 at 764.962 kb on - strand at 764.972 kb on + strand at 764.974 kb on + strand at 764.974 kb on + strand at 765.081 kb on + strand at 765.131 kb on + strand at 765.140 kb on + strand at 765.199 kb on + strand at 765.258 kb on - strand, within MMP_RS04030 at 765.258 kb on - strand, within MMP_RS04030 at 765.258 kb on - strand, within MMP_RS04030 at 765.297 kb on - strand, within MMP_RS04030 at 765.392 kb on - strand, within MMP_RS04030 at 765.412 kb on - strand, within MMP_RS04030 at 765.434 kb on + strand, within MMP_RS04030 at 765.506 kb on - strand, within MMP_RS04030 at 765.507 kb on + strand, within MMP_RS04030 at 765.577 kb on - strand at 765.577 kb on - strand at 765.577 kb on - strand at 765.578 kb on + strand at 765.578 kb on + strand at 765.604 kb on + strand at 765.628 kb on + strand at 765.633 kb on + strand at 765.633 kb on + strand at 765.647 kb on - strand at 765.662 kb on - strand at 765.662 kb on - strand at 765.717 kb on - strand at 765.717 kb on - strand at 765.717 kb on - strand at 765.722 kb on + strand at 765.759 kb on + strand at 766.011 kb on + strand, within MMP_RS04035 at 766.082 kb on - strand, within MMP_RS04035 at 766.361 kb on - strand, within MMP_RS04040 at 766.361 kb on - strand, within MMP_RS04040 at 766.362 kb on + strand, within MMP_RS04040 at 766.362 kb on + strand, within MMP_RS04040 at 766.363 kb on - strand, within MMP_RS04040 at 766.364 kb on + strand, within MMP_RS04040 at 766.365 kb on - strand, within MMP_RS04040 at 766.375 kb on + strand, within MMP_RS04040 at 766.413 kb on - strand, within MMP_RS04040 at 766.424 kb on - strand, within MMP_RS04040 at 766.528 kb on - strand, within MMP_RS04040 at 766.528 kb on - strand, within MMP_RS04040 at 766.529 kb on + strand, within MMP_RS04040 at 766.532 kb on - strand, within MMP_RS04040 at 766.626 kb on + strand, within MMP_RS04040 at 766.629 kb on - strand, within MMP_RS04040 at 766.757 kb on + strand at 766.819 kb on + strand, within MMP_RS04045 at 766.897 kb on - strand, within MMP_RS04045 at 766.985 kb on - strand, within MMP_RS04045 at 767.046 kb on + strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.053 kb on - strand, within MMP_RS04045 at 767.054 kb on + strand, within MMP_RS04045 at 767.145 kb on - strand, within MMP_RS04045 at 767.182 kb on - strand, within MMP_RS04045 at 767.186 kb on - strand, within MMP_RS04045 at 767.199 kb on + strand, within MMP_RS04045
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 764,871 - MMP_RS04025 0.85 -0.5 764,962 - -1.1 764,972 + +0.6 764,974 + +1.6 764,974 + -0.2 765,081 + +1.0 765,131 + -2.5 765,140 + +0.2 765,199 + +0.9 765,258 - MMP_RS04030 0.14 -1.7 765,258 - MMP_RS04030 0.14 +0.6 765,258 - MMP_RS04030 0.14 -0.1 765,297 - MMP_RS04030 0.24 -0.4 765,392 - MMP_RS04030 0.47 +0.3 765,412 - MMP_RS04030 0.52 +0.1 765,434 + MMP_RS04030 0.58 +0.6 765,506 - MMP_RS04030 0.76 -2.4 765,507 + MMP_RS04030 0.76 -1.3 765,577 - -0.1 765,577 - -3.6 765,577 - +1.1 765,578 + +1.4 765,578 + +1.0 765,604 + -1.2 765,628 + -1.5 765,633 + +0.3 765,633 + -1.8 765,647 - -1.3 765,662 - -4.3 765,662 - +1.5 765,717 - +0.9 765,717 - +0.9 765,717 - -0.4 765,722 + +1.5 765,759 + +0.7 766,011 + MMP_RS04035 0.49 +0.9 766,082 - MMP_RS04035 0.65 -2.9 766,361 - MMP_RS04040 0.25 +0.4 766,361 - MMP_RS04040 0.25 +1.5 766,362 + MMP_RS04040 0.25 -1.1 766,362 + MMP_RS04040 0.25 +1.9 766,363 - MMP_RS04040 0.25 -0.8 766,364 + MMP_RS04040 0.25 +1.1 766,365 - MMP_RS04040 0.26 -3.2 766,375 + MMP_RS04040 0.28 +1.0 766,413 - MMP_RS04040 0.36 -1.5 766,424 - MMP_RS04040 0.38 +2.5 766,528 - MMP_RS04040 0.60 +0.3 766,528 - MMP_RS04040 0.60 -0.7 766,529 + MMP_RS04040 0.60 +0.2 766,532 - MMP_RS04040 0.60 -2.4 766,626 + MMP_RS04040 0.80 +1.1 766,629 - MMP_RS04040 0.81 -1.1 766,757 + +0.1 766,819 + MMP_RS04045 0.12 -1.2 766,897 - MMP_RS04045 0.22 -1.0 766,985 - MMP_RS04045 0.34 +0.0 767,046 + MMP_RS04045 0.42 -1.2 767,053 - MMP_RS04045 0.43 +0.1 767,053 - MMP_RS04045 0.43 +0.5 767,054 + MMP_RS04045 0.43 +0.2 767,145 - MMP_RS04045 0.56 +0.3 767,182 - MMP_RS04045 0.61 +0.7 767,186 - MMP_RS04045 0.61 -1.8 767,199 + MMP_RS04045 0.63 -1.1
Or see this region's nucleotide sequence