Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03985 and MMP_RS03990 are separated by 944 nucleotides MMP_RS03990 and MMP_RS03995 are separated by 163 nucleotides
MMP_RS03985: MMP_RS03985 - hypothetical protein, at 754,505 to 755,509
_RS03985
MMP_RS03990: MMP_RS03990 - recombinase family protein, at 756,454 to 757,008
_RS03990
MMP_RS03995: MMP_RS03995 - flippase-like domain-containing protein, at 757,172 to 758,122
_RS03995
Position (kb) 756
757
758 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 755.454 kb on - strand at 755.498 kb on + strand at 755.512 kb on - strand at 755.643 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.646 kb on + strand at 755.648 kb on + strand at 755.648 kb on + strand at 755.648 kb on + strand at 755.665 kb on - strand at 755.708 kb on - strand at 755.708 kb on - strand at 755.709 kb on + strand at 755.709 kb on + strand at 755.709 kb on + strand at 755.709 kb on + strand at 755.710 kb on - strand at 755.711 kb on + strand at 755.794 kb on - strand at 755.836 kb on - strand at 755.836 kb on - strand at 755.836 kb on - strand at 755.837 kb on + strand at 755.837 kb on + strand at 755.859 kb on - strand at 755.860 kb on + strand at 755.892 kb on + strand at 755.937 kb on + strand at 755.937 kb on + strand at 755.955 kb on - strand at 755.956 kb on + strand at 755.989 kb on - strand at 755.990 kb on + strand at 755.991 kb on - strand at 755.995 kb on - strand at 755.996 kb on + strand at 755.998 kb on - strand at 755.998 kb on - strand at 756.074 kb on - strand at 756.093 kb on - strand at 756.093 kb on - strand at 756.109 kb on - strand at 756.118 kb on + strand at 756.143 kb on - strand at 756.147 kb on - strand at 756.148 kb on + strand at 756.203 kb on + strand at 756.209 kb on + strand at 756.267 kb on - strand at 756.305 kb on + strand at 756.339 kb on + strand at 756.371 kb on + strand at 756.391 kb on - strand at 756.392 kb on + strand at 756.455 kb on - strand at 756.455 kb on - strand at 756.456 kb on + strand at 756.473 kb on - strand at 756.477 kb on - strand at 756.653 kb on + strand, within MMP_RS03990 at 756.768 kb on - strand, within MMP_RS03990 at 756.835 kb on + strand, within MMP_RS03990 at 756.837 kb on - strand, within MMP_RS03990 at 756.840 kb on - strand, within MMP_RS03990 at 756.853 kb on - strand, within MMP_RS03990 at 756.894 kb on - strand, within MMP_RS03990 at 756.894 kb on - strand, within MMP_RS03990 at 756.895 kb on + strand, within MMP_RS03990 at 756.895 kb on + strand, within MMP_RS03990 at 756.942 kb on - strand, within MMP_RS03990 at 756.981 kb on - strand at 756.982 kb on + strand at 756.982 kb on + strand at 757.008 kb on - strand at 757.008 kb on - strand at 757.009 kb on + strand at 757.057 kb on - strand at 757.081 kb on - strand at 757.081 kb on - strand at 757.082 kb on + strand at 757.166 kb on + strand at 757.166 kb on + strand at 757.226 kb on + strand at 757.374 kb on + strand, within MMP_RS03995 at 757.374 kb on + strand, within MMP_RS03995 at 757.399 kb on - strand, within MMP_RS03995 at 757.434 kb on - strand, within MMP_RS03995 at 757.434 kb on - strand, within MMP_RS03995 at 757.434 kb on - strand, within MMP_RS03995 at 757.435 kb on + strand, within MMP_RS03995 at 757.435 kb on + strand, within MMP_RS03995 at 757.435 kb on + strand, within MMP_RS03995 at 757.441 kb on - strand, within MMP_RS03995 at 757.555 kb on - strand, within MMP_RS03995 at 757.616 kb on - strand, within MMP_RS03995 at 757.671 kb on + strand, within MMP_RS03995 at 757.672 kb on - strand, within MMP_RS03995 at 757.673 kb on + strand, within MMP_RS03995 at 757.727 kb on - strand, within MMP_RS03995 at 757.797 kb on + strand, within MMP_RS03995 at 758.006 kb on + strand, within MMP_RS03995
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 755,454 - -1.3 755,498 + +0.4 755,512 - +0.1 755,643 - -1.8 755,645 - +1.6 755,645 - +0.3 755,646 + -2.7 755,648 + +0.6 755,648 + +0.6 755,648 + -0.8 755,665 - -1.7 755,708 - +0.9 755,708 - -1.2 755,709 + -1.0 755,709 + +0.0 755,709 + -0.4 755,709 + -3.4 755,710 - +1.3 755,711 + -1.1 755,794 - -1.8 755,836 - -0.6 755,836 - -2.3 755,836 - +0.4 755,837 + -0.2 755,837 + -3.9 755,859 - +0.7 755,860 + -1.3 755,892 + -2.5 755,937 + -3.4 755,937 + +0.3 755,955 - -0.0 755,956 + -1.1 755,989 - +0.6 755,990 + +0.6 755,991 - +0.2 755,995 - -0.2 755,996 + -0.0 755,998 - +2.1 755,998 - -1.3 756,074 - -0.9 756,093 - +1.3 756,093 - -2.1 756,109 - -0.5 756,118 + +0.1 756,143 - +1.5 756,147 - +0.6 756,148 + +0.5 756,203 + -3.4 756,209 + -0.7 756,267 - -0.1 756,305 + +1.7 756,339 + +1.4 756,371 + -0.4 756,391 - -0.6 756,392 + +0.7 756,455 - -0.8 756,455 - -0.1 756,456 + +0.8 756,473 - -1.0 756,477 - -0.9 756,653 + MMP_RS03990 0.36 +1.0 756,768 - MMP_RS03990 0.57 -0.8 756,835 + MMP_RS03990 0.69 -2.6 756,837 - MMP_RS03990 0.69 -0.8 756,840 - MMP_RS03990 0.70 -0.9 756,853 - MMP_RS03990 0.72 -0.0 756,894 - MMP_RS03990 0.79 -2.3 756,894 - MMP_RS03990 0.79 -3.0 756,895 + MMP_RS03990 0.79 +0.9 756,895 + MMP_RS03990 0.79 +0.6 756,942 - MMP_RS03990 0.88 -2.5 756,981 - -1.5 756,982 + -0.0 756,982 + +0.5 757,008 - +0.4 757,008 - -1.3 757,009 + -0.3 757,057 - +1.2 757,081 - +0.9 757,081 - -0.9 757,082 + +0.9 757,166 + +0.4 757,166 + -0.9 757,226 + -0.2 757,374 + MMP_RS03995 0.21 +0.1 757,374 + MMP_RS03995 0.21 +0.2 757,399 - MMP_RS03995 0.24 +0.7 757,434 - MMP_RS03995 0.28 +0.1 757,434 - MMP_RS03995 0.28 +0.7 757,434 - MMP_RS03995 0.28 +0.0 757,435 + MMP_RS03995 0.28 -0.1 757,435 + MMP_RS03995 0.28 -1.2 757,435 + MMP_RS03995 0.28 +0.5 757,441 - MMP_RS03995 0.28 +0.1 757,555 - MMP_RS03995 0.40 -0.8 757,616 - MMP_RS03995 0.47 -0.5 757,671 + MMP_RS03995 0.52 +0.5 757,672 - MMP_RS03995 0.53 -0.8 757,673 + MMP_RS03995 0.53 +0.3 757,727 - MMP_RS03995 0.58 -1.8 757,797 + MMP_RS03995 0.66 +1.6 758,006 + MMP_RS03995 0.88 +1.1
Or see this region's nucleotide sequence