Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03940

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS09040 and MMP_RS03940 are separated by 1 nucleotidesMMP_RS03940 and MMP_RS03945 are separated by 28 nucleotidesMMP_RS03945 and MMP_RS03950 are separated by 2 nucleotides MMP_RS09040: MMP_RS09040 - AAA family ATPase, at 746,442 to 748,256 _RS09040 MMP_RS03940: MMP_RS03940 - McrC family protein, at 748,258 to 749,538 _RS03940 MMP_RS03945: MMP_RS03945 - nucleoside triphosphate pyrophosphohydrolase, at 749,567 to 749,875 _RS03945 MMP_RS03950: MMP_RS03950 - HNH endonuclease, at 749,878 to 750,849 _RS03950 Position (kb) 748 749 750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 747.341 kb on - strand, within MMP_RS09040at 747.365 kb on + strand, within MMP_RS09040at 747.368 kb on - strand, within MMP_RS09040at 747.383 kb on - strand, within MMP_RS09040at 747.420 kb on - strand, within MMP_RS09040at 747.421 kb on + strand, within MMP_RS09040at 747.422 kb on - strand, within MMP_RS09040at 747.422 kb on - strand, within MMP_RS09040at 747.422 kb on - strand, within MMP_RS09040at 747.423 kb on + strand, within MMP_RS09040at 747.493 kb on + strand, within MMP_RS09040at 747.593 kb on + strand, within MMP_RS09040at 747.641 kb on - strand, within MMP_RS09040at 747.647 kb on + strand, within MMP_RS09040at 747.663 kb on + strand, within MMP_RS09040at 747.692 kb on + strand, within MMP_RS09040at 747.696 kb on + strand, within MMP_RS09040at 747.736 kb on - strand, within MMP_RS09040at 747.809 kb on - strand, within MMP_RS09040at 747.827 kb on + strand, within MMP_RS09040at 747.830 kb on - strand, within MMP_RS09040at 747.830 kb on - strand, within MMP_RS09040at 747.830 kb on - strand, within MMP_RS09040at 747.832 kb on - strand, within MMP_RS09040at 747.852 kb on + strand, within MMP_RS09040at 747.884 kb on - strand, within MMP_RS09040at 747.885 kb on + strand, within MMP_RS09040at 747.885 kb on + strand, within MMP_RS09040at 747.889 kb on - strand, within MMP_RS09040at 747.889 kb on - strand, within MMP_RS09040at 747.889 kb on - strand, within MMP_RS09040at 747.900 kb on - strand, within MMP_RS09040at 747.900 kb on - strand, within MMP_RS09040at 747.901 kb on + strand, within MMP_RS09040at 747.901 kb on + strand, within MMP_RS09040at 747.901 kb on + strand, within MMP_RS09040at 747.971 kb on - strand, within MMP_RS09040at 747.972 kb on + strand, within MMP_RS09040at 747.976 kb on - strand, within MMP_RS09040at 747.976 kb on - strand, within MMP_RS09040at 748.027 kb on + strand, within MMP_RS09040at 748.064 kb on - strand, within MMP_RS09040at 748.082 kb on + strandat 748.212 kb on + strandat 748.215 kb on + strandat 748.219 kb on - strandat 748.219 kb on - strandat 748.219 kb on - strandat 748.220 kb on + strandat 748.221 kb on - strandat 748.221 kb on - strandat 748.222 kb on + strandat 748.223 kb on - strandat 748.223 kb on - strandat 748.223 kb on - strandat 748.224 kb on + strandat 748.269 kb on + strandat 748.297 kb on - strandat 748.304 kb on - strandat 748.351 kb on + strandat 748.426 kb on + strand, within MMP_RS03940at 748.426 kb on + strand, within MMP_RS03940at 748.643 kb on - strand, within MMP_RS03940at 748.665 kb on + strand, within MMP_RS03940at 748.716 kb on - strand, within MMP_RS03940at 748.717 kb on + strand, within MMP_RS03940at 748.773 kb on - strand, within MMP_RS03940at 748.858 kb on + strand, within MMP_RS03940at 748.988 kb on - strand, within MMP_RS03940at 749.102 kb on + strand, within MMP_RS03940at 749.132 kb on - strand, within MMP_RS03940at 749.132 kb on - strand, within MMP_RS03940at 749.271 kb on - strand, within MMP_RS03940at 749.340 kb on - strand, within MMP_RS03940at 749.340 kb on - strand, within MMP_RS03940at 749.355 kb on + strand, within MMP_RS03940at 749.360 kb on + strand, within MMP_RS03940at 749.372 kb on + strand, within MMP_RS03940at 749.397 kb on + strand, within MMP_RS03940at 749.397 kb on + strand, within MMP_RS03940at 749.445 kb on - strandat 749.459 kb on + strandat 749.509 kb on + strandat 749.545 kb on + strandat 749.545 kb on + strandat 749.549 kb on - strandat 749.550 kb on + strandat 749.550 kb on + strandat 749.551 kb on - strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.564 kb on + strandat 749.569 kb on + strandat 749.587 kb on - strandat 749.876 kb on + strandat 749.876 kb on + strandat 749.908 kb on + strandat 749.913 kb on + strandat 749.913 kb on + strandat 749.935 kb on - strandat 749.936 kb on + strandat 750.102 kb on + strand, within MMP_RS03950at 750.105 kb on - strand, within MMP_RS03950at 750.193 kb on + strand, within MMP_RS03950at 750.200 kb on + strand, within MMP_RS03950at 750.269 kb on + strand, within MMP_RS03950

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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747,341 - MMP_RS09040 0.50 +0.7
747,365 + MMP_RS09040 0.51 +1.7
747,368 - MMP_RS09040 0.51 -0.3
747,383 - MMP_RS09040 0.52 +0.7
747,420 - MMP_RS09040 0.54 -2.7
747,421 + MMP_RS09040 0.54 -1.0
747,422 - MMP_RS09040 0.54 -4.4
747,422 - MMP_RS09040 0.54 +0.4
747,422 - MMP_RS09040 0.54 -1.1
747,423 + MMP_RS09040 0.54 +0.1
747,493 + MMP_RS09040 0.58 +0.6
747,593 + MMP_RS09040 0.63 -0.2
747,641 - MMP_RS09040 0.66 +1.9
747,647 + MMP_RS09040 0.66 -0.2
747,663 + MMP_RS09040 0.67 +0.8
747,692 + MMP_RS09040 0.69 +1.3
747,696 + MMP_RS09040 0.69 +0.3
747,736 - MMP_RS09040 0.71 -1.2
747,809 - MMP_RS09040 0.75 +1.8
747,827 + MMP_RS09040 0.76 +1.1
747,830 - MMP_RS09040 0.76 +0.0
747,830 - MMP_RS09040 0.76 -0.2
747,830 - MMP_RS09040 0.76 +0.8
747,832 - MMP_RS09040 0.77 -1.2
747,852 + MMP_RS09040 0.78 +0.1
747,884 - MMP_RS09040 0.79 +0.6
747,885 + MMP_RS09040 0.80 -1.2
747,885 + MMP_RS09040 0.80 -0.5
747,889 - MMP_RS09040 0.80 -0.9
747,889 - MMP_RS09040 0.80 +1.4
747,889 - MMP_RS09040 0.80 +0.7
747,900 - MMP_RS09040 0.80 +0.4
747,900 - MMP_RS09040 0.80 +0.3
747,901 + MMP_RS09040 0.80 -0.2
747,901 + MMP_RS09040 0.80 +0.9
747,901 + MMP_RS09040 0.80 -1.5
747,971 - MMP_RS09040 0.84 -1.1
747,972 + MMP_RS09040 0.84 +1.8
747,976 - MMP_RS09040 0.85 -0.9
747,976 - MMP_RS09040 0.85 -1.5
748,027 + MMP_RS09040 0.87 -0.8
748,064 - MMP_RS09040 0.89 -1.3
748,082 + +0.4
748,212 + +1.7
748,215 + -0.5
748,219 - +0.9
748,219 - -1.1
748,219 - +1.8
748,220 + +0.4
748,221 - -3.0
748,221 - -3.4
748,222 + -0.3
748,223 - +1.2
748,223 - +1.2
748,223 - +0.9
748,224 + -0.1
748,269 + +1.2
748,297 - -2.0
748,304 - +1.1
748,351 + -0.1
748,426 + MMP_RS03940 0.13 -2.6
748,426 + MMP_RS03940 0.13 +0.6
748,643 - MMP_RS03940 0.30 -1.8
748,665 + MMP_RS03940 0.32 -1.9
748,716 - MMP_RS03940 0.36 -1.3
748,717 + MMP_RS03940 0.36 -0.4
748,773 - MMP_RS03940 0.40 +0.1
748,858 + MMP_RS03940 0.47 -0.5
748,988 - MMP_RS03940 0.57 -0.4
749,102 + MMP_RS03940 0.66 -0.1
749,132 - MMP_RS03940 0.68 -0.1
749,132 - MMP_RS03940 0.68 +0.4
749,271 - MMP_RS03940 0.79 -1.0
749,340 - MMP_RS03940 0.84 -1.4
749,340 - MMP_RS03940 0.84 +1.4
749,355 + MMP_RS03940 0.86 +0.4
749,360 + MMP_RS03940 0.86 -0.3
749,372 + MMP_RS03940 0.87 +0.9
749,397 + MMP_RS03940 0.89 -0.6
749,397 + MMP_RS03940 0.89 -0.6
749,445 - +1.4
749,459 + -1.2
749,509 + +1.3
749,545 + -1.0
749,545 + +1.3
749,549 - -1.1
749,550 + -0.2
749,550 + -0.4
749,551 - -1.3
749,552 + -1.2
749,552 + -1.9
749,552 + +0.0
749,564 + +0.0
749,569 + +1.0
749,587 - +0.5
749,876 + -0.9
749,876 + +0.8
749,908 + +1.4
749,913 + -2.6
749,913 + +0.2
749,935 - -0.0
749,936 + +0.6
750,102 + MMP_RS03950 0.23 -0.5
750,105 - MMP_RS03950 0.23 +1.2
750,193 + MMP_RS03950 0.32 +0.8
750,200 + MMP_RS03950 0.33 -2.1
750,269 + MMP_RS03950 0.40 +0.5

Or see this region's nucleotide sequence