Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03900 and MMP_RS03905 are separated by 19 nucleotides MMP_RS03905 and MMP_RS03910 are separated by 56 nucleotides MMP_RS03910 and MMP_RS03915 are separated by 107 nucleotides MMP_RS03915 and MMP_RS03920 are separated by 177 nucleotides
MMP_RS03900: MMP_RS03900 - minichromosome maintenance protein MCM, at 739,441 to 741,447
_RS03900
MMP_RS03905: MMP_RS03905 - hypothetical protein, at 741,467 to 741,994
_RS03905
MMP_RS03910: MMP_RS03910 - hypothetical protein, at 742,051 to 742,263
_RS03910
MMP_RS03915: MMP_RS03915 - DUF2080 family transposase-associated protein, at 742,371 to 742,568
_RS03915
MMP_RS03920: MMP_RS03920 - transcriptional regulator, at 742,746 to 743,045
_RS03920
Position (kb)
742
743 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 741.300 kb on + strand at 741.320 kb on - strand at 741.453 kb on + strand at 741.469 kb on + strand at 742.117 kb on - strand, within MMP_RS03910 at 742.225 kb on + strand, within MMP_RS03910 at 742.249 kb on - strand at 742.349 kb on + strand at 742.568 kb on - strand at 742.568 kb on - strand at 742.573 kb on - strand at 742.574 kb on + strand at 742.574 kb on + strand at 742.615 kb on - strand at 742.697 kb on - strand at 742.698 kb on + strand at 742.714 kb on - strand at 743.133 kb on - strand at 743.133 kb on - strand at 743.211 kb on - strand at 743.227 kb on - strand at 743.227 kb on - strand at 743.227 kb on - strand at 743.228 kb on + strand at 743.254 kb on - strand at 743.259 kb on - strand at 743.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 741,300 + +2.0 741,320 - -4.2 741,453 + +0.1 741,469 + -3.8 742,117 - MMP_RS03910 0.31 -0.5 742,225 + MMP_RS03910 0.82 -1.8 742,249 - +1.0 742,349 + -1.0 742,568 - +1.8 742,568 - -3.3 742,573 - +0.6 742,574 + +1.3 742,574 + -0.9 742,615 - +0.4 742,697 - +0.5 742,698 + -2.1 742,714 - +1.5 743,133 - +1.6 743,133 - +0.2 743,211 - -1.3 743,227 - -0.7 743,227 - -3.0 743,227 - +0.1 743,228 + -3.9 743,254 - -1.7 743,259 - +1.5 743,260 + +1.4
Or see this region's nucleotide sequence