Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03880 and MMP_RS03885 are separated by 59 nucleotides MMP_RS03885 and MMP_RS03890 are separated by 9 nucleotides MMP_RS03890 and MMP_RS08995 are separated by 2 nucleotides MMP_RS08995 and MMP_RS09000 are separated by 12 nucleotides MMP_RS09000 and MMP_RS03895 are separated by 332 nucleotides
MMP_RS03880: MMP_RS03880 - Fic family protein, at 736,065 to 737,234
_RS03880
MMP_RS03885: MMP_RS03885 - tyrosine-type recombinase/integrase, at 737,294 to 738,268
_RS03885
MMP_RS03890: MMP_RS03890 - DUF2540 domain-containing protein, at 738,278 to 738,538
_RS03890
MMP_RS08995: MMP_RS08995 - hypothetical protein, at 738,541 to 738,699
_RS08995
MMP_RS09000: MMP_RS09000 - hypothetical protein, at 738,712 to 738,867
_RS09000
MMP_RS03895: MMP_RS03895 - hypothetical protein, at 739,200 to 739,430
_RS03895
Position (kb) 737
738
739 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 736.306 kb on - strand, within MMP_RS03880 at 736.327 kb on - strand, within MMP_RS03880 at 736.327 kb on - strand, within MMP_RS03880 at 736.328 kb on + strand, within MMP_RS03880 at 736.328 kb on + strand, within MMP_RS03880 at 736.328 kb on + strand, within MMP_RS03880 at 736.331 kb on - strand, within MMP_RS03880 at 736.331 kb on - strand, within MMP_RS03880 at 736.332 kb on + strand, within MMP_RS03880 at 736.355 kb on + strand, within MMP_RS03880 at 736.393 kb on - strand, within MMP_RS03880 at 736.409 kb on - strand, within MMP_RS03880 at 736.432 kb on - strand, within MMP_RS03880 at 736.437 kb on + strand, within MMP_RS03880 at 736.473 kb on + strand, within MMP_RS03880 at 736.477 kb on - strand, within MMP_RS03880 at 736.484 kb on + strand, within MMP_RS03880 at 736.539 kb on - strand, within MMP_RS03880 at 736.539 kb on - strand, within MMP_RS03880 at 736.569 kb on - strand, within MMP_RS03880 at 736.605 kb on + strand, within MMP_RS03880 at 736.612 kb on - strand, within MMP_RS03880 at 736.632 kb on - strand, within MMP_RS03880 at 736.682 kb on + strand, within MMP_RS03880 at 736.682 kb on + strand, within MMP_RS03880 at 736.748 kb on - strand, within MMP_RS03880 at 736.748 kb on - strand, within MMP_RS03880 at 736.849 kb on - strand, within MMP_RS03880 at 736.909 kb on - strand, within MMP_RS03880 at 736.909 kb on - strand, within MMP_RS03880 at 736.910 kb on + strand, within MMP_RS03880 at 736.917 kb on + strand, within MMP_RS03880 at 736.975 kb on + strand, within MMP_RS03880 at 736.975 kb on + strand, within MMP_RS03880 at 736.975 kb on + strand, within MMP_RS03880 at 737.031 kb on + strand, within MMP_RS03880 at 737.045 kb on - strand, within MMP_RS03880 at 737.055 kb on - strand, within MMP_RS03880 at 737.056 kb on + strand, within MMP_RS03880 at 737.061 kb on + strand, within MMP_RS03880 at 737.061 kb on + strand, within MMP_RS03880 at 737.061 kb on + strand, within MMP_RS03880 at 737.092 kb on - strand, within MMP_RS03880 at 737.254 kb on + strand at 737.286 kb on + strand at 737.300 kb on - strand at 737.314 kb on - strand at 737.318 kb on - strand at 737.355 kb on - strand at 737.626 kb on + strand, within MMP_RS03885 at 737.690 kb on + strand, within MMP_RS03885 at 737.734 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.878 kb on + strand, within MMP_RS03885 at 738.065 kb on - strand, within MMP_RS03885 at 738.192 kb on - strand at 738.193 kb on + strand at 738.273 kb on + strand at 738.290 kb on - strand at 738.330 kb on + strand, within MMP_RS03890 at 738.435 kb on + strand, within MMP_RS03890 at 738.457 kb on - strand, within MMP_RS03890 at 738.464 kb on - strand, within MMP_RS03890 at 738.470 kb on + strand, within MMP_RS03890 at 738.473 kb on - strand, within MMP_RS03890 at 738.474 kb on + strand, within MMP_RS03890 at 738.524 kb on - strand at 738.539 kb on + strand at 738.543 kb on + strand at 738.595 kb on + strand, within MMP_RS08995 at 739.090 kb on - strand at 739.211 kb on - strand at 739.213 kb on - strand at 739.257 kb on + strand, within MMP_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 736,306 - MMP_RS03880 0.21 +0.7 736,327 - MMP_RS03880 0.22 -0.5 736,327 - MMP_RS03880 0.22 -1.7 736,328 + MMP_RS03880 0.22 -1.7 736,328 + MMP_RS03880 0.22 -1.4 736,328 + MMP_RS03880 0.22 -0.9 736,331 - MMP_RS03880 0.23 -1.1 736,331 - MMP_RS03880 0.23 -1.4 736,332 + MMP_RS03880 0.23 -2.5 736,355 + MMP_RS03880 0.25 -1.2 736,393 - MMP_RS03880 0.28 +0.2 736,409 - MMP_RS03880 0.29 +0.9 736,432 - MMP_RS03880 0.31 +1.2 736,437 + MMP_RS03880 0.32 +0.6 736,473 + MMP_RS03880 0.35 -1.9 736,477 - MMP_RS03880 0.35 -1.1 736,484 + MMP_RS03880 0.36 -1.7 736,539 - MMP_RS03880 0.41 -0.7 736,539 - MMP_RS03880 0.41 -2.8 736,569 - MMP_RS03880 0.43 -1.8 736,605 + MMP_RS03880 0.46 +0.9 736,612 - MMP_RS03880 0.47 +0.4 736,632 - MMP_RS03880 0.48 +0.3 736,682 + MMP_RS03880 0.53 +0.7 736,682 + MMP_RS03880 0.53 +1.4 736,748 - MMP_RS03880 0.58 -0.7 736,748 - MMP_RS03880 0.58 -1.6 736,849 - MMP_RS03880 0.67 -3.9 736,909 - MMP_RS03880 0.72 +0.7 736,909 - MMP_RS03880 0.72 +0.4 736,910 + MMP_RS03880 0.72 -1.2 736,917 + MMP_RS03880 0.73 +0.9 736,975 + MMP_RS03880 0.78 -2.2 736,975 + MMP_RS03880 0.78 -1.1 736,975 + MMP_RS03880 0.78 -3.9 737,031 + MMP_RS03880 0.83 +1.1 737,045 - MMP_RS03880 0.84 -0.1 737,055 - MMP_RS03880 0.85 +0.8 737,056 + MMP_RS03880 0.85 +0.7 737,061 + MMP_RS03880 0.85 -0.7 737,061 + MMP_RS03880 0.85 +0.1 737,061 + MMP_RS03880 0.85 -3.0 737,092 - MMP_RS03880 0.88 +1.4 737,254 + +0.0 737,286 + -0.2 737,300 - -0.4 737,314 - -0.3 737,318 - -2.0 737,355 - -1.1 737,626 + MMP_RS03885 0.34 -0.2 737,690 + MMP_RS03885 0.41 -2.5 737,734 + MMP_RS03885 0.45 -1.4 737,852 + MMP_RS03885 0.57 -0.5 737,852 + MMP_RS03885 0.57 +1.5 737,852 + MMP_RS03885 0.57 +0.3 737,853 - MMP_RS03885 0.57 +0.9 737,853 - MMP_RS03885 0.57 +0.1 737,853 - MMP_RS03885 0.57 +1.9 737,854 + MMP_RS03885 0.57 +0.6 737,854 + MMP_RS03885 0.57 -1.1 737,854 + MMP_RS03885 0.57 -2.8 737,878 + MMP_RS03885 0.60 -2.6 738,065 - MMP_RS03885 0.79 -2.8 738,192 - +0.9 738,193 + +1.4 738,273 + -0.3 738,290 - +1.2 738,330 + MMP_RS03890 0.20 +1.1 738,435 + MMP_RS03890 0.60 +1.5 738,457 - MMP_RS03890 0.69 -1.6 738,464 - MMP_RS03890 0.71 -1.0 738,470 + MMP_RS03890 0.74 -0.7 738,473 - MMP_RS03890 0.75 -1.7 738,474 + MMP_RS03890 0.75 -2.1 738,524 - +1.0 738,539 + +0.7 738,543 + -1.5 738,595 + MMP_RS08995 0.34 +0.2 739,090 - -1.3 739,211 - +0.3 739,213 - +0.2 739,257 + MMP_RS03895 0.25 +0.7
Or see this region's nucleotide sequence