Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03805

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03795 and MMP_RS03800 are separated by 352 nucleotidesMMP_RS03800 and MMP_RS03805 are separated by 35 nucleotidesMMP_RS03805 and MMP_RS03810 overlap by 4 nucleotides MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882 _RS03795 MMP_RS03800: MMP_RS03800 - hypothetical protein, at 717,235 to 717,468 _RS03800 MMP_RS03805: MMP_RS03805 - excinuclease ABC subunit UvrB, at 717,504 to 719,444 _RS03805 MMP_RS03810: MMP_RS03810 - excinuclease ABC subunit UvrC, at 719,441 to 721,024 _RS03810 Position (kb) 717 718 719 720Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 716.615 kb on + strand, within MMP_RS03795at 716.686 kb on - strand, within MMP_RS03795at 716.693 kb on - strand, within MMP_RS03795at 716.693 kb on - strand, within MMP_RS03795at 716.694 kb on + strand, within MMP_RS03795at 716.700 kb on + strand, within MMP_RS03795at 716.700 kb on + strand, within MMP_RS03795at 716.706 kb on - strand, within MMP_RS03795at 716.707 kb on + strand, within MMP_RS03795at 716.773 kb on + strand, within MMP_RS03795at 716.886 kb on - strandat 716.894 kb on - strandat 716.906 kb on - strandat 716.906 kb on - strandat 716.927 kb on - strandat 716.964 kb on - strandat 716.965 kb on + strandat 717.017 kb on + strandat 717.040 kb on - strandat 717.041 kb on + strandat 717.042 kb on - strandat 717.043 kb on + strandat 717.045 kb on + strandat 717.045 kb on + strandat 717.163 kb on - strandat 717.163 kb on - strandat 717.164 kb on + strandat 717.164 kb on + strandat 717.166 kb on - strandat 717.191 kb on + strandat 717.195 kb on - strandat 717.196 kb on + strandat 717.199 kb on - strandat 717.215 kb on - strandat 717.215 kb on - strandat 717.277 kb on + strand, within MMP_RS03800at 717.277 kb on + strand, within MMP_RS03800at 717.283 kb on - strand, within MMP_RS03800at 717.435 kb on + strand, within MMP_RS03800at 717.456 kb on - strandat 717.484 kb on + strandat 717.586 kb on - strandat 717.587 kb on + strandat 717.637 kb on + strandat 717.637 kb on + strandat 717.638 kb on - strandat 717.639 kb on + strandat 717.894 kb on - strand, within MMP_RS03805at 718.014 kb on - strand, within MMP_RS03805at 718.026 kb on - strand, within MMP_RS03805at 718.061 kb on + strand, within MMP_RS03805at 718.228 kb on + strand, within MMP_RS03805at 718.297 kb on - strand, within MMP_RS03805at 718.319 kb on - strand, within MMP_RS03805at 718.388 kb on - strand, within MMP_RS03805at 718.388 kb on - strand, within MMP_RS03805at 718.399 kb on - strand, within MMP_RS03805at 718.399 kb on - strand, within MMP_RS03805at 718.399 kb on - strand, within MMP_RS03805at 718.400 kb on + strand, within MMP_RS03805at 718.473 kb on - strand, within MMP_RS03805at 718.474 kb on + strand, within MMP_RS03805at 718.561 kb on + strand, within MMP_RS03805at 718.561 kb on + strand, within MMP_RS03805at 718.577 kb on + strand, within MMP_RS03805at 718.639 kb on + strand, within MMP_RS03805at 718.659 kb on + strand, within MMP_RS03805at 718.659 kb on + strand, within MMP_RS03805at 718.709 kb on + strand, within MMP_RS03805at 718.725 kb on - strand, within MMP_RS03805at 718.773 kb on + strand, within MMP_RS03805at 718.999 kb on - strand, within MMP_RS03805at 719.025 kb on - strand, within MMP_RS03805at 719.111 kb on - strand, within MMP_RS03805at 719.111 kb on - strand, within MMP_RS03805at 719.132 kb on - strand, within MMP_RS03805at 719.134 kb on - strand, within MMP_RS03805at 719.135 kb on + strand, within MMP_RS03805at 719.153 kb on + strand, within MMP_RS03805at 719.174 kb on + strand, within MMP_RS03805at 719.174 kb on + strand, within MMP_RS03805at 719.238 kb on + strand, within MMP_RS03805at 719.250 kb on - strand, within MMP_RS03805at 719.291 kb on - strandat 719.295 kb on + strandat 719.479 kb on + strandat 719.494 kb on - strandat 719.525 kb on - strandat 719.687 kb on - strand, within MMP_RS03810at 719.857 kb on - strand, within MMP_RS03810at 719.858 kb on + strand, within MMP_RS03810at 719.897 kb on - strand, within MMP_RS03810at 720.072 kb on + strand, within MMP_RS03810at 720.136 kb on - strand, within MMP_RS03810at 720.219 kb on - strand, within MMP_RS03810at 720.246 kb on + strand, within MMP_RS03810at 720.264 kb on + strand, within MMP_RS03810

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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716,615 + MMP_RS03795 0.52 -0.6
716,686 - MMP_RS03795 0.65 +0.5
716,693 - MMP_RS03795 0.66 -4.3
716,693 - MMP_RS03795 0.66 +0.3
716,694 + MMP_RS03795 0.66 +1.2
716,700 + MMP_RS03795 0.67 -1.6
716,700 + MMP_RS03795 0.67 +0.4
716,706 - MMP_RS03795 0.68 -0.6
716,707 + MMP_RS03795 0.68 +1.0
716,773 + MMP_RS03795 0.80 +0.0
716,886 - -0.9
716,894 - -0.7
716,906 - +1.2
716,906 - +0.3
716,927 - +0.6
716,964 - +0.7
716,965 + +1.9
717,017 + -1.5
717,040 - +0.9
717,041 + -0.3
717,042 - -0.9
717,043 + -1.1
717,045 + +0.6
717,045 + +1.9
717,163 - +0.4
717,163 - +1.9
717,164 + +0.1
717,164 + -1.1
717,166 - +0.5
717,191 + -1.5
717,195 - +0.3
717,196 + -2.6
717,199 - +1.4
717,215 - +0.9
717,215 - +1.0
717,277 + MMP_RS03800 0.18 +1.1
717,277 + MMP_RS03800 0.18 +0.1
717,283 - MMP_RS03800 0.21 -2.9
717,435 + MMP_RS03800 0.85 -0.0
717,456 - -0.5
717,484 + -0.5
717,586 - +1.4
717,587 + +0.8
717,637 + -1.9
717,637 + +0.6
717,638 - +1.8
717,639 + +0.4
717,894 - MMP_RS03805 0.20 +0.3
718,014 - MMP_RS03805 0.26 +0.7
718,026 - MMP_RS03805 0.27 -1.3
718,061 + MMP_RS03805 0.29 -0.9
718,228 + MMP_RS03805 0.37 +0.9
718,297 - MMP_RS03805 0.41 +0.8
718,319 - MMP_RS03805 0.42 +1.6
718,388 - MMP_RS03805 0.46 +1.5
718,388 - MMP_RS03805 0.46 +0.3
718,399 - MMP_RS03805 0.46 -1.4
718,399 - MMP_RS03805 0.46 -3.2
718,399 - MMP_RS03805 0.46 +0.8
718,400 + MMP_RS03805 0.46 +1.2
718,473 - MMP_RS03805 0.50 +0.6
718,474 + MMP_RS03805 0.50 +2.0
718,561 + MMP_RS03805 0.54 -1.6
718,561 + MMP_RS03805 0.54 +0.8
718,577 + MMP_RS03805 0.55 +1.9
718,639 + MMP_RS03805 0.58 +0.1
718,659 + MMP_RS03805 0.60 +0.8
718,659 + MMP_RS03805 0.60 +0.4
718,709 + MMP_RS03805 0.62 -3.3
718,725 - MMP_RS03805 0.63 -1.9
718,773 + MMP_RS03805 0.65 -0.0
718,999 - MMP_RS03805 0.77 +0.0
719,025 - MMP_RS03805 0.78 +0.7
719,111 - MMP_RS03805 0.83 -0.0
719,111 - MMP_RS03805 0.83 +1.8
719,132 - MMP_RS03805 0.84 -3.0
719,134 - MMP_RS03805 0.84 -2.7
719,135 + MMP_RS03805 0.84 +0.7
719,153 + MMP_RS03805 0.85 +1.1
719,174 + MMP_RS03805 0.86 -0.3
719,174 + MMP_RS03805 0.86 +1.2
719,238 + MMP_RS03805 0.89 +0.7
719,250 - MMP_RS03805 0.90 +1.4
719,291 - +0.7
719,295 + -1.5
719,479 + +1.5
719,494 - +1.7
719,525 - +0.4
719,687 - MMP_RS03810 0.16 -1.4
719,857 - MMP_RS03810 0.26 -2.4
719,858 + MMP_RS03810 0.26 -0.6
719,897 - MMP_RS03810 0.29 -3.5
720,072 + MMP_RS03810 0.40 +0.3
720,136 - MMP_RS03810 0.44 +0.7
720,219 - MMP_RS03810 0.49 +0.4
720,246 + MMP_RS03810 0.51 -4.7
720,264 + MMP_RS03810 0.52 -1.7

Or see this region's nucleotide sequence