Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03780 and MMP_RS03785 are separated by 17 nucleotides MMP_RS03785 and MMP_RS03790 are separated by 139 nucleotides MMP_RS03790 and MMP_RS03795 are separated by 7 nucleotides MMP_RS03795 and MMP_RS03800 are separated by 352 nucleotides MMP_RS03800 and MMP_RS03805 are separated by 35 nucleotides
MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381
_RS03780
MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743
_RS03785
MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317
_RS03790
MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882
_RS03795
MMP_RS03800: MMP_RS03800 - hypothetical protein, at 717,235 to 717,468
_RS03800
MMP_RS03805: MMP_RS03805 - excinuclease ABC subunit UvrB, at 717,504 to 719,444
_RS03805
Position (kb) 716
717 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 715.341 kb on - strand at 715.367 kb on - strand at 715.461 kb on - strand, within MMP_RS03785 at 715.573 kb on + strand, within MMP_RS03785 at 715.614 kb on - strand, within MMP_RS03785 at 715.735 kb on + strand at 715.780 kb on - strand at 715.794 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.821 kb on - strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.824 kb on + strand at 715.870 kb on - strand at 715.892 kb on - strand at 715.893 kb on + strand at 716.093 kb on - strand, within MMP_RS03790 at 716.114 kb on - strand, within MMP_RS03790 at 716.140 kb on + strand, within MMP_RS03790 at 716.140 kb on - strand, within MMP_RS03790 at 716.140 kb on - strand, within MMP_RS03790 at 716.141 kb on + strand, within MMP_RS03790 at 716.142 kb on - strand, within MMP_RS03790 at 716.142 kb on - strand, within MMP_RS03790 at 716.144 kb on - strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.165 kb on + strand, within MMP_RS03790 at 716.206 kb on + strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.258 kb on - strand, within MMP_RS03790 at 716.259 kb on + strand, within MMP_RS03790 at 716.326 kb on - strand at 716.350 kb on - strand at 716.388 kb on + strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.389 kb on - strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.390 kb on + strand, within MMP_RS03795 at 716.391 kb on - strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.392 kb on + strand, within MMP_RS03795 at 716.425 kb on + strand, within MMP_RS03795 at 716.615 kb on + strand, within MMP_RS03795 at 716.686 kb on - strand, within MMP_RS03795 at 716.693 kb on - strand, within MMP_RS03795 at 716.693 kb on - strand, within MMP_RS03795 at 716.694 kb on + strand, within MMP_RS03795 at 716.700 kb on + strand, within MMP_RS03795 at 716.700 kb on + strand, within MMP_RS03795 at 716.706 kb on - strand, within MMP_RS03795 at 716.707 kb on + strand, within MMP_RS03795 at 716.773 kb on + strand, within MMP_RS03795 at 716.886 kb on - strand at 716.894 kb on - strand at 716.906 kb on - strand at 716.906 kb on - strand at 716.927 kb on - strand at 716.964 kb on - strand at 716.965 kb on + strand at 717.017 kb on + strand at 717.040 kb on - strand at 717.041 kb on + strand at 717.042 kb on - strand at 717.043 kb on + strand at 717.045 kb on + strand at 717.045 kb on + strand at 717.163 kb on - strand at 717.163 kb on - strand at 717.164 kb on + strand at 717.164 kb on + strand at 717.166 kb on - strand at 717.191 kb on + strand at 717.195 kb on - strand at 717.196 kb on + strand at 717.199 kb on - strand at 717.215 kb on - strand at 717.215 kb on - strand at 717.277 kb on + strand, within MMP_RS03800 at 717.277 kb on + strand, within MMP_RS03800 at 717.283 kb on - strand, within MMP_RS03800 at 717.435 kb on + strand, within MMP_RS03800 at 717.456 kb on - strand at 717.484 kb on + strand at 717.586 kb on - strand at 717.587 kb on + strand at 717.637 kb on + strand at 717.637 kb on + strand at 717.638 kb on - strand at 717.639 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 715,341 - -1.2 715,367 - -2.6 715,461 - MMP_RS03785 0.18 -1.1 715,573 + MMP_RS03785 0.50 -0.3 715,614 - MMP_RS03785 0.62 -2.2 715,735 + +0.6 715,780 - -0.2 715,794 - +0.3 715,798 - +1.4 715,798 - -0.5 715,798 - -0.9 715,821 - +1.7 715,822 + -0.8 715,822 + +0.5 715,822 + -3.2 715,822 + +0.5 715,824 + +0.5 715,870 - -0.5 715,892 - +0.3 715,893 + +1.3 716,093 - MMP_RS03790 0.48 +0.1 716,114 - MMP_RS03790 0.53 +1.1 716,140 + MMP_RS03790 0.59 -0.1 716,140 - MMP_RS03790 0.59 -2.0 716,140 - MMP_RS03790 0.59 +1.4 716,141 + MMP_RS03790 0.59 +0.6 716,142 - MMP_RS03790 0.60 -0.6 716,142 - MMP_RS03790 0.60 -1.8 716,144 - MMP_RS03790 0.60 +0.5 716,145 + MMP_RS03790 0.60 +2.3 716,145 + MMP_RS03790 0.60 -3.4 716,145 + MMP_RS03790 0.60 +1.4 716,165 + MMP_RS03790 0.65 +0.1 716,206 + MMP_RS03790 0.74 +1.9 716,252 - MMP_RS03790 0.85 -0.8 716,252 - MMP_RS03790 0.85 -3.7 716,258 - MMP_RS03790 0.86 +2.6 716,259 + MMP_RS03790 0.86 +0.8 716,326 - +1.3 716,350 - -0.6 716,388 + MMP_RS03795 0.11 -5.0 716,389 - MMP_RS03795 0.11 -0.2 716,389 - MMP_RS03795 0.11 +1.2 716,389 - MMP_RS03795 0.11 -1.6 716,389 - MMP_RS03795 0.11 +0.2 716,389 - MMP_RS03795 0.11 +0.1 716,389 - MMP_RS03795 0.11 -2.1 716,390 + MMP_RS03795 0.12 +0.1 716,390 + MMP_RS03795 0.12 -0.7 716,390 + MMP_RS03795 0.12 -3.0 716,391 - MMP_RS03795 0.12 -0.1 716,392 + MMP_RS03795 0.12 +0.2 716,392 + MMP_RS03795 0.12 -0.2 716,392 + MMP_RS03795 0.12 +0.2 716,425 + MMP_RS03795 0.18 +1.5 716,615 + MMP_RS03795 0.52 -0.6 716,686 - MMP_RS03795 0.65 +0.5 716,693 - MMP_RS03795 0.66 -4.3 716,693 - MMP_RS03795 0.66 +0.3 716,694 + MMP_RS03795 0.66 +1.2 716,700 + MMP_RS03795 0.67 -1.6 716,700 + MMP_RS03795 0.67 +0.4 716,706 - MMP_RS03795 0.68 -0.6 716,707 + MMP_RS03795 0.68 +1.0 716,773 + MMP_RS03795 0.80 +0.0 716,886 - -0.9 716,894 - -0.7 716,906 - +1.2 716,906 - +0.3 716,927 - +0.6 716,964 - +0.7 716,965 + +1.9 717,017 + -1.5 717,040 - +0.9 717,041 + -0.3 717,042 - -0.9 717,043 + -1.1 717,045 + +0.6 717,045 + +1.9 717,163 - +0.4 717,163 - +1.9 717,164 + +0.1 717,164 + -1.1 717,166 - +0.5 717,191 + -1.5 717,195 - +0.3 717,196 + -2.6 717,199 - +1.4 717,215 - +0.9 717,215 - +1.0 717,277 + MMP_RS03800 0.18 +1.1 717,277 + MMP_RS03800 0.18 +0.1 717,283 - MMP_RS03800 0.21 -2.9 717,435 + MMP_RS03800 0.85 -0.0 717,456 - -0.5 717,484 + -0.5 717,586 - +1.4 717,587 + +0.8 717,637 + -1.9 717,637 + +0.6 717,638 - +1.8 717,639 + +0.4
Or see this region's nucleotide sequence