Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03785

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03775 and MMP_RS03780 are separated by 145 nucleotidesMMP_RS03780 and MMP_RS03785 are separated by 17 nucleotidesMMP_RS03785 and MMP_RS03790 are separated by 139 nucleotidesMMP_RS03790 and MMP_RS03795 are separated by 7 nucleotides MMP_RS03775: MMP_RS03775 - 4Fe-4S dicluster domain-containing protein, at 714,028 to 714,708 _RS03775 MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381 _RS03780 MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743 _RS03785 MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317 _RS03790 MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882 _RS03795 Position (kb) 715 716Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 714.403 kb on - strand, within MMP_RS03775at 714.404 kb on + strand, within MMP_RS03775at 714.660 kb on + strandat 714.816 kb on - strandat 714.817 kb on + strandat 714.859 kb on - strandat 714.861 kb on - strandat 714.877 kb on + strandat 714.887 kb on - strandat 714.890 kb on - strandat 714.923 kb on + strand, within MMP_RS03780at 714.942 kb on - strand, within MMP_RS03780at 714.949 kb on - strand, within MMP_RS03780at 715.023 kb on - strand, within MMP_RS03780at 715.027 kb on - strand, within MMP_RS03780at 715.090 kb on - strand, within MMP_RS03780at 715.122 kb on - strand, within MMP_RS03780at 715.184 kb on + strand, within MMP_RS03780at 715.216 kb on + strand, within MMP_RS03780at 715.254 kb on - strand, within MMP_RS03780at 715.341 kb on - strandat 715.367 kb on - strandat 715.461 kb on - strand, within MMP_RS03785at 715.573 kb on + strand, within MMP_RS03785at 715.614 kb on - strand, within MMP_RS03785at 715.735 kb on + strandat 715.780 kb on - strandat 715.794 kb on - strandat 715.798 kb on - strandat 715.798 kb on - strandat 715.798 kb on - strandat 715.821 kb on - strandat 715.822 kb on + strandat 715.822 kb on + strandat 715.822 kb on + strandat 715.822 kb on + strandat 715.824 kb on + strandat 715.870 kb on - strandat 715.892 kb on - strandat 715.893 kb on + strandat 716.093 kb on - strand, within MMP_RS03790at 716.114 kb on - strand, within MMP_RS03790at 716.140 kb on + strand, within MMP_RS03790at 716.140 kb on - strand, within MMP_RS03790at 716.140 kb on - strand, within MMP_RS03790at 716.141 kb on + strand, within MMP_RS03790at 716.142 kb on - strand, within MMP_RS03790at 716.142 kb on - strand, within MMP_RS03790at 716.144 kb on - strand, within MMP_RS03790at 716.145 kb on + strand, within MMP_RS03790at 716.145 kb on + strand, within MMP_RS03790at 716.145 kb on + strand, within MMP_RS03790at 716.165 kb on + strand, within MMP_RS03790at 716.206 kb on + strand, within MMP_RS03790at 716.252 kb on - strand, within MMP_RS03790at 716.252 kb on - strand, within MMP_RS03790at 716.258 kb on - strand, within MMP_RS03790at 716.259 kb on + strand, within MMP_RS03790at 716.326 kb on - strandat 716.350 kb on - strandat 716.388 kb on + strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.389 kb on - strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.390 kb on + strand, within MMP_RS03795at 716.391 kb on - strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.392 kb on + strand, within MMP_RS03795at 716.425 kb on + strand, within MMP_RS03795at 716.615 kb on + strand, within MMP_RS03795at 716.686 kb on - strand, within MMP_RS03795at 716.693 kb on - strand, within MMP_RS03795at 716.693 kb on - strand, within MMP_RS03795at 716.694 kb on + strand, within MMP_RS03795at 716.700 kb on + strand, within MMP_RS03795at 716.700 kb on + strand, within MMP_RS03795at 716.706 kb on - strand, within MMP_RS03795at 716.707 kb on + strand, within MMP_RS03795

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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714,403 - MMP_RS03775 0.55 -2.7
714,404 + MMP_RS03775 0.55 -0.9
714,660 + +0.5
714,816 - +0.7
714,817 + -3.5
714,859 - -0.7
714,861 - +0.2
714,877 + +0.3
714,887 - +1.8
714,890 - +1.3
714,923 + MMP_RS03780 0.13 -3.0
714,942 - MMP_RS03780 0.17 -0.2
714,949 - MMP_RS03780 0.18 +1.1
715,023 - MMP_RS03780 0.32 +0.4
715,027 - MMP_RS03780 0.33 -0.6
715,090 - MMP_RS03780 0.45 +2.1
715,122 - MMP_RS03780 0.51 +0.8
715,184 + MMP_RS03780 0.62 -0.8
715,216 + MMP_RS03780 0.69 +0.9
715,254 - MMP_RS03780 0.76 +2.1
715,341 - -1.2
715,367 - -2.6
715,461 - MMP_RS03785 0.18 -1.1
715,573 + MMP_RS03785 0.50 -0.3
715,614 - MMP_RS03785 0.62 -2.2
715,735 + +0.6
715,780 - -0.2
715,794 - +0.3
715,798 - +1.4
715,798 - -0.5
715,798 - -0.9
715,821 - +1.7
715,822 + -0.8
715,822 + +0.5
715,822 + -3.2
715,822 + +0.5
715,824 + +0.5
715,870 - -0.5
715,892 - +0.3
715,893 + +1.3
716,093 - MMP_RS03790 0.48 +0.1
716,114 - MMP_RS03790 0.53 +1.1
716,140 + MMP_RS03790 0.59 -0.1
716,140 - MMP_RS03790 0.59 -2.0
716,140 - MMP_RS03790 0.59 +1.4
716,141 + MMP_RS03790 0.59 +0.6
716,142 - MMP_RS03790 0.60 -0.6
716,142 - MMP_RS03790 0.60 -1.8
716,144 - MMP_RS03790 0.60 +0.5
716,145 + MMP_RS03790 0.60 +2.3
716,145 + MMP_RS03790 0.60 -3.4
716,145 + MMP_RS03790 0.60 +1.4
716,165 + MMP_RS03790 0.65 +0.1
716,206 + MMP_RS03790 0.74 +1.9
716,252 - MMP_RS03790 0.85 -0.8
716,252 - MMP_RS03790 0.85 -3.7
716,258 - MMP_RS03790 0.86 +2.6
716,259 + MMP_RS03790 0.86 +0.8
716,326 - +1.3
716,350 - -0.6
716,388 + MMP_RS03795 0.11 -5.0
716,389 - MMP_RS03795 0.11 -0.2
716,389 - MMP_RS03795 0.11 +1.2
716,389 - MMP_RS03795 0.11 -1.6
716,389 - MMP_RS03795 0.11 +0.2
716,389 - MMP_RS03795 0.11 +0.1
716,389 - MMP_RS03795 0.11 -2.1
716,390 + MMP_RS03795 0.12 +0.1
716,390 + MMP_RS03795 0.12 -0.7
716,390 + MMP_RS03795 0.12 -3.0
716,391 - MMP_RS03795 0.12 -0.1
716,392 + MMP_RS03795 0.12 +0.2
716,392 + MMP_RS03795 0.12 -0.2
716,392 + MMP_RS03795 0.12 +0.2
716,425 + MMP_RS03795 0.18 +1.5
716,615 + MMP_RS03795 0.52 -0.6
716,686 - MMP_RS03795 0.65 +0.5
716,693 - MMP_RS03795 0.66 -4.3
716,693 - MMP_RS03795 0.66 +0.3
716,694 + MMP_RS03795 0.66 +1.2
716,700 + MMP_RS03795 0.67 -1.6
716,700 + MMP_RS03795 0.67 +0.4
716,706 - MMP_RS03795 0.68 -0.6
716,707 + MMP_RS03795 0.68 +1.0

Or see this region's nucleotide sequence