Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03770 and MMP_RS03775 are separated by 104 nucleotides MMP_RS03775 and MMP_RS03780 are separated by 145 nucleotides MMP_RS03780 and MMP_RS03785 are separated by 17 nucleotides MMP_RS03785 and MMP_RS03790 are separated by 139 nucleotides MMP_RS03790 and MMP_RS03795 are separated by 7 nucleotides
MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923
_RS03770
MMP_RS03775: MMP_RS03775 - 4Fe-4S dicluster domain-containing protein, at 714,028 to 714,708
_RS03775
MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381
_RS03780
MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743
_RS03785
MMP_RS03790: MMP_RS03790 - hypothetical protein, at 715,883 to 716,317
_RS03790
MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882
_RS03795
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 713.939 kb on + strand at 713.962 kb on - strand at 714.010 kb on - strand at 714.011 kb on + strand at 714.075 kb on - strand at 714.228 kb on - strand, within MMP_RS03775 at 714.386 kb on - strand, within MMP_RS03775 at 714.403 kb on - strand, within MMP_RS03775 at 714.404 kb on + strand, within MMP_RS03775 at 714.660 kb on + strand at 714.816 kb on - strand at 714.817 kb on + strand at 714.859 kb on - strand at 714.861 kb on - strand at 714.877 kb on + strand at 714.887 kb on - strand at 714.890 kb on - strand at 714.923 kb on + strand, within MMP_RS03780 at 714.942 kb on - strand, within MMP_RS03780 at 714.949 kb on - strand, within MMP_RS03780 at 715.023 kb on - strand, within MMP_RS03780 at 715.027 kb on - strand, within MMP_RS03780 at 715.090 kb on - strand, within MMP_RS03780 at 715.122 kb on - strand, within MMP_RS03780 at 715.184 kb on + strand, within MMP_RS03780 at 715.216 kb on + strand, within MMP_RS03780 at 715.254 kb on - strand, within MMP_RS03780 at 715.341 kb on - strand at 715.367 kb on - strand at 715.461 kb on - strand, within MMP_RS03785 at 715.573 kb on + strand, within MMP_RS03785 at 715.614 kb on - strand, within MMP_RS03785 at 715.735 kb on + strand at 715.780 kb on - strand at 715.794 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.798 kb on - strand at 715.821 kb on - strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.822 kb on + strand at 715.824 kb on + strand at 715.870 kb on - strand at 715.892 kb on - strand at 715.893 kb on + strand at 716.093 kb on - strand, within MMP_RS03790 at 716.114 kb on - strand, within MMP_RS03790 at 716.140 kb on + strand, within MMP_RS03790 at 716.140 kb on - strand, within MMP_RS03790 at 716.140 kb on - strand, within MMP_RS03790 at 716.141 kb on + strand, within MMP_RS03790 at 716.142 kb on - strand, within MMP_RS03790 at 716.142 kb on - strand, within MMP_RS03790 at 716.144 kb on - strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.145 kb on + strand, within MMP_RS03790 at 716.165 kb on + strand, within MMP_RS03790 at 716.206 kb on + strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.252 kb on - strand, within MMP_RS03790 at 716.258 kb on - strand, within MMP_RS03790 at 716.259 kb on + strand, within MMP_RS03790 at 716.326 kb on - strand at 716.350 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 713,939 + +0.8 713,962 - +0.9 714,010 - -0.1 714,011 + +1.6 714,075 - -0.9 714,228 - MMP_RS03775 0.29 -1.9 714,386 - MMP_RS03775 0.53 +0.0 714,403 - MMP_RS03775 0.55 -2.7 714,404 + MMP_RS03775 0.55 -0.9 714,660 + +0.5 714,816 - +0.7 714,817 + -3.5 714,859 - -0.7 714,861 - +0.2 714,877 + +0.3 714,887 - +1.8 714,890 - +1.3 714,923 + MMP_RS03780 0.13 -3.0 714,942 - MMP_RS03780 0.17 -0.2 714,949 - MMP_RS03780 0.18 +1.1 715,023 - MMP_RS03780 0.32 +0.4 715,027 - MMP_RS03780 0.33 -0.6 715,090 - MMP_RS03780 0.45 +2.1 715,122 - MMP_RS03780 0.51 +0.8 715,184 + MMP_RS03780 0.62 -0.8 715,216 + MMP_RS03780 0.69 +0.9 715,254 - MMP_RS03780 0.76 +2.1 715,341 - -1.2 715,367 - -2.6 715,461 - MMP_RS03785 0.18 -1.1 715,573 + MMP_RS03785 0.50 -0.3 715,614 - MMP_RS03785 0.62 -2.2 715,735 + +0.6 715,780 - -0.2 715,794 - +0.3 715,798 - +1.4 715,798 - -0.5 715,798 - -0.9 715,821 - +1.7 715,822 + -0.8 715,822 + +0.5 715,822 + -3.2 715,822 + +0.5 715,824 + +0.5 715,870 - -0.5 715,892 - +0.3 715,893 + +1.3 716,093 - MMP_RS03790 0.48 +0.1 716,114 - MMP_RS03790 0.53 +1.1 716,140 + MMP_RS03790 0.59 -0.1 716,140 - MMP_RS03790 0.59 -2.0 716,140 - MMP_RS03790 0.59 +1.4 716,141 + MMP_RS03790 0.59 +0.6 716,142 - MMP_RS03790 0.60 -0.6 716,142 - MMP_RS03790 0.60 -1.8 716,144 - MMP_RS03790 0.60 +0.5 716,145 + MMP_RS03790 0.60 +2.3 716,145 + MMP_RS03790 0.60 -3.4 716,145 + MMP_RS03790 0.60 +1.4 716,165 + MMP_RS03790 0.65 +0.1 716,206 + MMP_RS03790 0.74 +1.9 716,252 - MMP_RS03790 0.85 -0.8 716,252 - MMP_RS03790 0.85 -3.7 716,258 - MMP_RS03790 0.86 +2.6 716,259 + MMP_RS03790 0.86 +0.8 716,326 - +1.3 716,350 - -0.6
Or see this region's nucleotide sequence