Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03770 and MMP_RS03775 are separated by 104 nucleotides MMP_RS03775 and MMP_RS03780 are separated by 145 nucleotides MMP_RS03780 and MMP_RS03785 are separated by 17 nucleotides
MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923
_RS03770
MMP_RS03775: MMP_RS03775 - 4Fe-4S dicluster domain-containing protein, at 714,028 to 714,708
_RS03775
MMP_RS03780: MMP_RS03780 - 4Fe-4S binding protein, at 714,854 to 715,381
_RS03780
MMP_RS03785: MMP_RS03785 - cupin domain-containing protein, at 715,399 to 715,743
_RS03785
Position (kb) 714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 713.064 kb on - strand, within MMP_RS03770 at 713.067 kb on + strand, within MMP_RS03770 at 713.153 kb on - strand, within MMP_RS03770 at 713.156 kb on + strand, within MMP_RS03770 at 713.234 kb on - strand, within MMP_RS03770 at 713.235 kb on + strand, within MMP_RS03770 at 713.281 kb on - strand, within MMP_RS03770 at 713.286 kb on + strand, within MMP_RS03770 at 713.853 kb on - strand at 713.939 kb on + strand at 713.962 kb on - strand at 714.010 kb on - strand at 714.011 kb on + strand at 714.075 kb on - strand at 714.228 kb on - strand, within MMP_RS03775 at 714.386 kb on - strand, within MMP_RS03775 at 714.403 kb on - strand, within MMP_RS03775 at 714.404 kb on + strand, within MMP_RS03775 at 714.660 kb on + strand at 714.816 kb on - strand at 714.817 kb on + strand at 714.859 kb on - strand at 714.861 kb on - strand at 714.877 kb on + strand at 714.887 kb on - strand at 714.890 kb on - strand at 714.923 kb on + strand, within MMP_RS03780 at 714.942 kb on - strand, within MMP_RS03780 at 714.949 kb on - strand, within MMP_RS03780 at 715.023 kb on - strand, within MMP_RS03780 at 715.027 kb on - strand, within MMP_RS03780 at 715.090 kb on - strand, within MMP_RS03780 at 715.122 kb on - strand, within MMP_RS03780 at 715.184 kb on + strand, within MMP_RS03780 at 715.216 kb on + strand, within MMP_RS03780 at 715.254 kb on - strand, within MMP_RS03780 at 715.341 kb on - strand at 715.367 kb on - strand at 715.461 kb on - strand, within MMP_RS03785 at 715.573 kb on + strand, within MMP_RS03785 at 715.614 kb on - strand, within MMP_RS03785
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 713,064 - MMP_RS03770 0.48 -0.4 713,067 + MMP_RS03770 0.48 +0.9 713,153 - MMP_RS03770 0.53 -1.6 713,156 + MMP_RS03770 0.53 -1.1 713,234 - MMP_RS03770 0.58 +0.6 713,235 + MMP_RS03770 0.58 -1.7 713,281 - MMP_RS03770 0.61 -1.3 713,286 + MMP_RS03770 0.61 -0.6 713,853 - -0.8 713,939 + +0.8 713,962 - +0.9 714,010 - -0.1 714,011 + +1.6 714,075 - -0.9 714,228 - MMP_RS03775 0.29 -1.9 714,386 - MMP_RS03775 0.53 +0.0 714,403 - MMP_RS03775 0.55 -2.7 714,404 + MMP_RS03775 0.55 -0.9 714,660 + +0.5 714,816 - +0.7 714,817 + -3.5 714,859 - -0.7 714,861 - +0.2 714,877 + +0.3 714,887 - +1.8 714,890 - +1.3 714,923 + MMP_RS03780 0.13 -3.0 714,942 - MMP_RS03780 0.17 -0.2 714,949 - MMP_RS03780 0.18 +1.1 715,023 - MMP_RS03780 0.32 +0.4 715,027 - MMP_RS03780 0.33 -0.6 715,090 - MMP_RS03780 0.45 +2.1 715,122 - MMP_RS03780 0.51 +0.8 715,184 + MMP_RS03780 0.62 -0.8 715,216 + MMP_RS03780 0.69 +0.9 715,254 - MMP_RS03780 0.76 +2.1 715,341 - -1.2 715,367 - -2.6 715,461 - MMP_RS03785 0.18 -1.1 715,573 + MMP_RS03785 0.50 -0.3 715,614 - MMP_RS03785 0.62 -2.2
Or see this region's nucleotide sequence