Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03720 and MMP_RS03725 are separated by 9 nucleotides MMP_RS03725 and MMP_RS03730 are separated by 85 nucleotides
MMP_RS03720: MMP_RS03720 - cation-transporting P-type ATPase, at 701,140 to 703,920
_RS03720
MMP_RS03725: MMP_RS03725 - magnesium/cobalt transporter CorA, at 703,930 to 704,988
_RS03725
MMP_RS03730: MMP_RS03730 - ABC transporter substrate-binding protein, at 705,074 to 705,820
_RS03730
Position (kb) 703
704
705 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 703.011 kb on - strand, within MMP_RS03720 at 703.179 kb on - strand, within MMP_RS03720 at 703.255 kb on + strand, within MMP_RS03720 at 703.255 kb on + strand, within MMP_RS03720 at 703.310 kb on + strand, within MMP_RS03720 at 703.417 kb on + strand, within MMP_RS03720 at 703.419 kb on + strand, within MMP_RS03720 at 703.604 kb on + strand, within MMP_RS03720 at 703.652 kb on + strand at 703.861 kb on - strand at 703.863 kb on - strand at 703.926 kb on - strand at 703.990 kb on - strand at 703.990 kb on - strand at 704.202 kb on + strand, within MMP_RS03725 at 704.202 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.248 kb on + strand, within MMP_RS03725 at 704.252 kb on + strand, within MMP_RS03725 at 704.252 kb on + strand, within MMP_RS03725 at 704.292 kb on + strand, within MMP_RS03725 at 704.364 kb on + strand, within MMP_RS03725 at 704.364 kb on + strand, within MMP_RS03725 at 704.412 kb on - strand, within MMP_RS03725 at 704.434 kb on - strand, within MMP_RS03725 at 704.434 kb on - strand, within MMP_RS03725 at 704.516 kb on + strand, within MMP_RS03725 at 704.632 kb on + strand, within MMP_RS03725 at 704.681 kb on + strand, within MMP_RS03725 at 704.696 kb on + strand, within MMP_RS03725 at 704.715 kb on + strand, within MMP_RS03725 at 704.791 kb on + strand, within MMP_RS03725 at 704.863 kb on - strand, within MMP_RS03725 at 704.942 kb on - strand at 704.986 kb on - strand at 704.999 kb on + strand at 705.017 kb on - strand at 705.041 kb on + strand at 705.041 kb on + strand at 705.046 kb on + strand at 705.048 kb on - strand at 705.051 kb on + strand at 705.099 kb on - strand at 705.177 kb on - strand, within MMP_RS03730 at 705.178 kb on + strand, within MMP_RS03730 at 705.178 kb on + strand, within MMP_RS03730 at 705.179 kb on - strand, within MMP_RS03730 at 705.179 kb on - strand, within MMP_RS03730 at 705.180 kb on + strand, within MMP_RS03730 at 705.185 kb on - strand, within MMP_RS03730 at 705.185 kb on - strand, within MMP_RS03730 at 705.185 kb on - strand, within MMP_RS03730 at 705.185 kb on - strand, within MMP_RS03730 at 705.237 kb on - strand, within MMP_RS03730 at 705.237 kb on - strand, within MMP_RS03730 at 705.272 kb on + strand, within MMP_RS03730 at 705.306 kb on + strand, within MMP_RS03730 at 705.315 kb on + strand, within MMP_RS03730 at 705.407 kb on - strand, within MMP_RS03730 at 705.419 kb on - strand, within MMP_RS03730 at 705.420 kb on + strand, within MMP_RS03730 at 705.560 kb on - strand, within MMP_RS03730 at 705.565 kb on - strand, within MMP_RS03730 at 705.626 kb on - strand, within MMP_RS03730 at 705.642 kb on + strand, within MMP_RS03730 at 705.642 kb on + strand, within MMP_RS03730 at 705.682 kb on - strand, within MMP_RS03730 at 705.689 kb on + strand, within MMP_RS03730 at 705.732 kb on - strand, within MMP_RS03730 at 705.739 kb on - strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.745 kb on + strand, within MMP_RS03730 at 705.763 kb on - strand at 705.763 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.767 kb on - strand at 705.768 kb on + strand at 705.768 kb on + strand at 705.798 kb on - strand at 705.876 kb on - strand at 705.876 kb on - strand at 705.876 kb on - strand at 705.877 kb on + strand at 705.881 kb on + strand at 705.881 kb on + strand at 705.886 kb on - strand at 705.907 kb on + strand at 705.910 kb on + strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.911 kb on - strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.912 kb on + strand at 705.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 703,011 - MMP_RS03720 0.67 +0.5 703,179 - MMP_RS03720 0.73 -0.6 703,255 + MMP_RS03720 0.76 +0.3 703,255 + MMP_RS03720 0.76 +0.5 703,310 + MMP_RS03720 0.78 +1.2 703,417 + MMP_RS03720 0.82 +0.0 703,419 + MMP_RS03720 0.82 -1.9 703,604 + MMP_RS03720 0.89 -2.7 703,652 + +1.4 703,861 - -1.5 703,863 - -3.5 703,926 - -1.1 703,990 - +0.5 703,990 - +0.3 704,202 + MMP_RS03725 0.26 +0.9 704,202 + MMP_RS03725 0.26 -1.0 704,248 + MMP_RS03725 0.30 -0.9 704,248 + MMP_RS03725 0.30 -0.8 704,248 + MMP_RS03725 0.30 -2.2 704,248 + MMP_RS03725 0.30 -0.8 704,248 + MMP_RS03725 0.30 -1.0 704,252 + MMP_RS03725 0.30 -2.3 704,252 + MMP_RS03725 0.30 -0.7 704,292 + MMP_RS03725 0.34 -0.1 704,364 + MMP_RS03725 0.41 +1.2 704,364 + MMP_RS03725 0.41 +0.3 704,412 - MMP_RS03725 0.46 -0.5 704,434 - MMP_RS03725 0.48 +0.4 704,434 - MMP_RS03725 0.48 +1.2 704,516 + MMP_RS03725 0.55 -2.5 704,632 + MMP_RS03725 0.66 -0.1 704,681 + MMP_RS03725 0.71 -1.0 704,696 + MMP_RS03725 0.72 +1.9 704,715 + MMP_RS03725 0.74 -1.1 704,791 + MMP_RS03725 0.81 +0.0 704,863 - MMP_RS03725 0.88 +0.2 704,942 - +1.6 704,986 - -1.3 704,999 + -2.6 705,017 - -0.1 705,041 + +1.2 705,041 + -1.1 705,046 + +1.1 705,048 - +0.8 705,051 + +1.2 705,099 - +1.5 705,177 - MMP_RS03730 0.14 -3.2 705,178 + MMP_RS03730 0.14 +0.8 705,178 + MMP_RS03730 0.14 -4.0 705,179 - MMP_RS03730 0.14 +0.3 705,179 - MMP_RS03730 0.14 +2.1 705,180 + MMP_RS03730 0.14 -0.2 705,185 - MMP_RS03730 0.15 -4.4 705,185 - MMP_RS03730 0.15 +0.1 705,185 - MMP_RS03730 0.15 +0.2 705,185 - MMP_RS03730 0.15 -1.7 705,237 - MMP_RS03730 0.22 -1.7 705,237 - MMP_RS03730 0.22 +1.1 705,272 + MMP_RS03730 0.27 +1.4 705,306 + MMP_RS03730 0.31 +0.2 705,315 + MMP_RS03730 0.32 +0.6 705,407 - MMP_RS03730 0.45 -1.9 705,419 - MMP_RS03730 0.46 -0.2 705,420 + MMP_RS03730 0.46 -4.1 705,560 - MMP_RS03730 0.65 -0.0 705,565 - MMP_RS03730 0.66 +1.5 705,626 - MMP_RS03730 0.74 -0.9 705,642 + MMP_RS03730 0.76 +1.0 705,642 + MMP_RS03730 0.76 +0.6 705,682 - MMP_RS03730 0.81 +2.0 705,689 + MMP_RS03730 0.82 +0.7 705,732 - MMP_RS03730 0.88 +0.2 705,739 - MMP_RS03730 0.89 -1.6 705,745 + MMP_RS03730 0.90 -2.0 705,745 + MMP_RS03730 0.90 -4.8 705,745 + MMP_RS03730 0.90 +0.1 705,745 + MMP_RS03730 0.90 -1.6 705,745 + MMP_RS03730 0.90 -0.1 705,745 + MMP_RS03730 0.90 -0.6 705,763 - -1.9 705,763 - +1.0 705,767 - +0.2 705,767 - +0.8 705,767 - -0.8 705,767 - -0.3 705,767 - -0.3 705,768 + +1.0 705,768 + +0.3 705,798 - +0.3 705,876 - +0.6 705,876 - +1.9 705,876 - -0.1 705,877 + +1.2 705,881 + -0.2 705,881 + -1.2 705,886 - -1.4 705,907 + -3.0 705,910 + -0.6 705,911 - +0.8 705,911 - +0.5 705,911 - +2.3 705,912 + +0.5 705,912 + -0.4 705,912 + +0.7 705,913 - -1.3
Or see this region's nucleotide sequence