Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03390 and MMP_RS03395 are separated by 212 nucleotides MMP_RS03395 and MMP_RS03400 are separated by 1 nucleotides MMP_RS03400 and MMP_RS03405 are separated by 3 nucleotides
MMP_RS03390: MMP_RS03390 - malate dehydrogenase, at 636,877 to 637,821
_RS03390
MMP_RS03395: MMP_RS03395 - hypothetical protein, at 638,034 to 638,234
_RS03395
MMP_RS03400: MMP_RS03400 - archease, at 638,236 to 638,652
_RS03400
MMP_RS03405: MMP_RS03405 - RNA 3'-terminal phosphate cyclase, at 638,656 to 639,675
_RS03405
Position (kb) 638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 637.352 kb on + strand, within MMP_RS03390 at 637.433 kb on - strand, within MMP_RS03390 at 637.441 kb on - strand, within MMP_RS03390 at 637.469 kb on + strand, within MMP_RS03390 at 637.476 kb on - strand, within MMP_RS03390 at 637.502 kb on + strand, within MMP_RS03390 at 637.582 kb on + strand, within MMP_RS03390 at 637.586 kb on + strand, within MMP_RS03390 at 637.594 kb on + strand, within MMP_RS03390 at 637.821 kb on - strand at 637.836 kb on - strand at 637.837 kb on + strand at 637.841 kb on + strand at 637.864 kb on - strand at 637.866 kb on - strand at 637.866 kb on - strand at 637.867 kb on + strand at 637.870 kb on - strand at 637.870 kb on - strand at 637.871 kb on + strand at 637.871 kb on + strand at 637.872 kb on - strand at 637.873 kb on + strand at 637.873 kb on + strand at 637.874 kb on - strand at 637.874 kb on - strand at 637.887 kb on + strand at 637.919 kb on + strand at 637.922 kb on - strand at 637.923 kb on + strand at 637.927 kb on + strand at 638.002 kb on - strand at 638.002 kb on - strand at 638.006 kb on - strand at 638.054 kb on - strand, within MMP_RS03395 at 638.127 kb on + strand, within MMP_RS03395 at 638.132 kb on - strand, within MMP_RS03395 at 638.212 kb on + strand, within MMP_RS03395 at 638.315 kb on + strand, within MMP_RS03400 at 638.374 kb on - strand, within MMP_RS03400 at 638.375 kb on + strand, within MMP_RS03400 at 638.473 kb on - strand, within MMP_RS03400 at 638.473 kb on - strand, within MMP_RS03400 at 638.647 kb on + strand at 638.648 kb on - strand at 638.653 kb on + strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.677 kb on - strand at 638.751 kb on + strand at 638.951 kb on - strand, within MMP_RS03405 at 638.952 kb on + strand, within MMP_RS03405 at 639.010 kb on + strand, within MMP_RS03405 at 639.060 kb on - strand, within MMP_RS03405 at 639.075 kb on - strand, within MMP_RS03405 at 639.388 kb on + strand, within MMP_RS03405 at 639.402 kb on - strand, within MMP_RS03405 at 639.451 kb on - strand, within MMP_RS03405 at 639.470 kb on + strand, within MMP_RS03405 at 639.567 kb on - strand, within MMP_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 637,352 + MMP_RS03390 0.50 +1.7 637,433 - MMP_RS03390 0.59 +0.4 637,441 - MMP_RS03390 0.60 +0.9 637,469 + MMP_RS03390 0.63 -0.5 637,476 - MMP_RS03390 0.63 +0.9 637,502 + MMP_RS03390 0.66 -0.1 637,582 + MMP_RS03390 0.75 +1.0 637,586 + MMP_RS03390 0.75 -0.1 637,594 + MMP_RS03390 0.76 -2.3 637,821 - +0.5 637,836 - -1.4 637,837 + +2.3 637,841 + -1.6 637,864 - +1.0 637,866 - -1.5 637,866 - +1.4 637,867 + -0.1 637,870 - +0.7 637,870 - -3.7 637,871 + -0.8 637,871 + -0.2 637,872 - +0.5 637,873 + -0.5 637,873 + +1.4 637,874 - -0.4 637,874 - +0.1 637,887 + +1.2 637,919 + -0.3 637,922 - -0.8 637,923 + -3.3 637,927 + +0.5 638,002 - -0.5 638,002 - +2.3 638,006 - -0.8 638,054 - MMP_RS03395 0.10 +1.2 638,127 + MMP_RS03395 0.46 +1.3 638,132 - MMP_RS03395 0.49 -0.3 638,212 + MMP_RS03395 0.89 +2.4 638,315 + MMP_RS03400 0.19 -0.5 638,374 - MMP_RS03400 0.33 -1.6 638,375 + MMP_RS03400 0.33 -2.1 638,473 - MMP_RS03400 0.57 -1.4 638,473 - MMP_RS03400 0.57 -2.1 638,647 + -1.2 638,648 - -0.9 638,653 + -1.8 638,677 - -0.2 638,677 - -0.0 638,677 - -0.0 638,677 - +0.7 638,677 - +1.7 638,677 - +1.3 638,751 + -0.1 638,951 - MMP_RS03405 0.29 +0.9 638,952 + MMP_RS03405 0.29 +0.8 639,010 + MMP_RS03405 0.35 -1.5 639,060 - MMP_RS03405 0.40 -0.2 639,075 - MMP_RS03405 0.41 +0.5 639,388 + MMP_RS03405 0.72 +2.0 639,402 - MMP_RS03405 0.73 +0.1 639,451 - MMP_RS03405 0.78 +0.0 639,470 + MMP_RS03405 0.80 -2.8 639,567 - MMP_RS03405 0.89 +0.5
Or see this region's nucleotide sequence