Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03380 and MMP_RS03385 are separated by 4 nucleotides MMP_RS03385 and MMP_RS03390 are separated by 16 nucleotides
MMP_RS03380: MMP_RS03380 - DUF354 domain-containing protein, at 634,967 to 635,980
_RS03380
MMP_RS03385: MMP_RS03385 - cation diffusion facilitator family transporter, at 635,985 to 636,860
_RS03385
MMP_RS03390: MMP_RS03390 - malate dehydrogenase, at 636,877 to 637,821
_RS03390
Position (kb) 635
636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 635.869 kb on + strand at 635.973 kb on - strand at 635.978 kb on - strand at 636.014 kb on - strand at 636.290 kb on - strand, within MMP_RS03385 at 636.837 kb on + strand at 636.883 kb on + strand at 636.914 kb on + strand at 637.060 kb on + strand, within MMP_RS03390 at 637.095 kb on - strand, within MMP_RS03390 at 637.102 kb on - strand, within MMP_RS03390 at 637.156 kb on - strand, within MMP_RS03390 at 637.352 kb on + strand, within MMP_RS03390 at 637.433 kb on - strand, within MMP_RS03390 at 637.441 kb on - strand, within MMP_RS03390 at 637.469 kb on + strand, within MMP_RS03390 at 637.476 kb on - strand, within MMP_RS03390 at 637.502 kb on + strand, within MMP_RS03390 at 637.582 kb on + strand, within MMP_RS03390 at 637.586 kb on + strand, within MMP_RS03390 at 637.594 kb on + strand, within MMP_RS03390 at 637.821 kb on - strand at 637.836 kb on - strand at 637.837 kb on + strand at 637.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 635,869 + +0.6 635,973 - -2.5 635,978 - -1.1 636,014 - +0.3 636,290 - MMP_RS03385 0.35 -1.7 636,837 + +0.9 636,883 + -2.8 636,914 + +0.1 637,060 + MMP_RS03390 0.19 +1.3 637,095 - MMP_RS03390 0.23 -0.2 637,102 - MMP_RS03390 0.24 +0.9 637,156 - MMP_RS03390 0.30 +0.2 637,352 + MMP_RS03390 0.50 +1.7 637,433 - MMP_RS03390 0.59 +0.4 637,441 - MMP_RS03390 0.60 +0.9 637,469 + MMP_RS03390 0.63 -0.5 637,476 - MMP_RS03390 0.63 +0.9 637,502 + MMP_RS03390 0.66 -0.1 637,582 + MMP_RS03390 0.75 +1.0 637,586 + MMP_RS03390 0.75 -0.1 637,594 + MMP_RS03390 0.76 -2.3 637,821 - +0.5 637,836 - -1.4 637,837 + +2.3 637,841 + -1.6
Or see this region's nucleotide sequence