Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03355 and MMP_RS03360 are separated by 95 nucleotides MMP_RS03360 and MMP_RS03365 are separated by 19 nucleotides MMP_RS03365 and MMP_RS03370 are separated by 39 nucleotides MMP_RS03370 and MMP_RS03375 are separated by 147 nucleotides
MMP_RS03355: MMP_RS03355 - beta-propeller domain-containing protein, at 630,535 to 632,772
_RS03355
MMP_RS03360: MMP_RS03360 - 50S ribosomal protein L24, at 632,868 to 633,056
_RS03360
MMP_RS03365: MMP_RS03365 - 30S ribosomal protein S28e, at 633,076 to 633,306
_RS03365
MMP_RS03370: MMP_RS03370 - 50S ribosomal protein L7Ae, at 633,346 to 633,699
_RS03370
MMP_RS03375: MMP_RS03375 - methanogenesis marker 12 protein, at 633,847 to 634,824
_RS03375
Position (kb) 633
634 Strain fitness (log2 ratio) -1
0
1
2 at 632.315 kb on + strand, within MMP_RS03355 at 632.347 kb on - strand, within MMP_RS03355 at 632.348 kb on + strand, within MMP_RS03355 at 632.361 kb on + strand, within MMP_RS03355 at 632.510 kb on - strand, within MMP_RS03355 at 632.582 kb on - strand at 632.589 kb on + strand at 632.589 kb on + strand at 632.619 kb on + strand at 632.739 kb on + strand at 632.739 kb on + strand at 632.742 kb on - strand at 632.837 kb on - strand at 633.691 kb on - strand at 633.692 kb on + strand at 633.790 kb on - strand at 633.793 kb on + strand at 633.810 kb on + strand at 633.816 kb on - strand at 633.839 kb on - strand at 633.889 kb on - strand at 634.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 632,315 + MMP_RS03355 0.80 +0.4 632,347 - MMP_RS03355 0.81 +1.6 632,348 + MMP_RS03355 0.81 -0.1 632,361 + MMP_RS03355 0.82 +2.2 632,510 - MMP_RS03355 0.88 -0.1 632,582 - -0.1 632,589 + +0.9 632,589 + -0.8 632,619 + +0.7 632,739 + +0.3 632,739 + +0.2 632,742 - +1.8 632,837 - -0.4 633,691 - +0.4 633,692 + +0.8 633,790 - -1.0 633,793 + -1.2 633,810 + -0.9 633,816 - -0.6 633,839 - -0.5 633,889 - -0.4 634,127 - +0.3
Or see this region's nucleotide sequence