Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03345 and MMP_RS03350 are separated by 39 nucleotides MMP_RS03350 and MMP_RS03355 are separated by 108 nucleotides
MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844
_RS03345
MMP_RS03350: MMP_RS03350 - winged helix-turn-helix domain-containing protein, at 629,884 to 630,426
_RS03350
MMP_RS03355: MMP_RS03355 - beta-propeller domain-containing protein, at 630,535 to 632,772
_RS03355
Position (kb) 629
630
631 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 628.999 kb on - strand, within MMP_RS03345 at 629.048 kb on - strand, within MMP_RS03345 at 629.049 kb on + strand, within MMP_RS03345 at 629.053 kb on - strand, within MMP_RS03345 at 629.063 kb on - strand, within MMP_RS03345 at 629.064 kb on + strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.142 kb on + strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.366 kb on + strand, within MMP_RS03345 at 629.368 kb on + strand, within MMP_RS03345 at 629.557 kb on - strand, within MMP_RS03345 at 629.569 kb on + strand, within MMP_RS03345 at 629.608 kb on - strand, within MMP_RS03345 at 629.674 kb on - strand, within MMP_RS03345 at 629.754 kb on - strand at 629.760 kb on - strand at 629.768 kb on - strand at 629.790 kb on + strand at 629.801 kb on - strand at 629.802 kb on + strand at 629.802 kb on + strand at 629.804 kb on + strand at 629.805 kb on - strand at 629.845 kb on - strand at 629.883 kb on - strand at 629.952 kb on + strand, within MMP_RS03350 at 630.202 kb on + strand, within MMP_RS03350 at 630.203 kb on - strand, within MMP_RS03350 at 630.322 kb on + strand, within MMP_RS03350 at 630.407 kb on - strand at 630.412 kb on - strand at 630.413 kb on + strand at 630.483 kb on - strand at 630.575 kb on - strand at 630.599 kb on + strand at 630.599 kb on + strand at 630.628 kb on - strand at 630.628 kb on - strand at 630.631 kb on + strand at 630.713 kb on + strand at 630.730 kb on + strand at 630.794 kb on + strand, within MMP_RS03355 at 631.032 kb on + strand, within MMP_RS03355 at 631.055 kb on + strand, within MMP_RS03355 at 631.341 kb on - strand, within MMP_RS03355 at 631.352 kb on + strand, within MMP_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 628,999 - MMP_RS03345 0.31 -0.0 629,048 - MMP_RS03345 0.35 +0.0 629,049 + MMP_RS03345 0.35 -0.7 629,053 - MMP_RS03345 0.36 -2.8 629,063 - MMP_RS03345 0.37 +0.6 629,064 + MMP_RS03345 0.37 -0.8 629,065 - MMP_RS03345 0.37 -1.2 629,065 - MMP_RS03345 0.37 +0.7 629,065 - MMP_RS03345 0.37 +0.3 629,141 - MMP_RS03345 0.43 -0.5 629,141 - MMP_RS03345 0.43 +0.6 629,142 + MMP_RS03345 0.43 +1.1 629,143 - MMP_RS03345 0.43 +0.7 629,143 - MMP_RS03345 0.43 +1.3 629,144 + MMP_RS03345 0.43 +1.3 629,144 + MMP_RS03345 0.43 -1.7 629,366 + MMP_RS03345 0.61 +0.8 629,368 + MMP_RS03345 0.61 -2.5 629,557 - MMP_RS03345 0.77 +0.5 629,569 + MMP_RS03345 0.78 +1.2 629,608 - MMP_RS03345 0.81 +0.7 629,674 - MMP_RS03345 0.86 +0.9 629,754 - -0.6 629,760 - -0.2 629,768 - +1.1 629,790 + +1.0 629,801 - -2.5 629,802 + -0.3 629,802 + +0.9 629,804 + -0.6 629,805 - -3.9 629,845 - -1.8 629,883 - -1.0 629,952 + MMP_RS03350 0.13 -2.8 630,202 + MMP_RS03350 0.59 -0.0 630,203 - MMP_RS03350 0.59 -0.8 630,322 + MMP_RS03350 0.81 -1.2 630,407 - -0.9 630,412 - -0.1 630,413 + -0.2 630,483 - -0.6 630,575 - -1.4 630,599 + -2.6 630,599 + -0.6 630,628 - +0.7 630,628 - -0.0 630,631 + -4.8 630,713 + -0.7 630,730 + +0.5 630,794 + MMP_RS03355 0.12 +0.6 631,032 + MMP_RS03355 0.22 -0.2 631,055 + MMP_RS03355 0.23 +0.5 631,341 - MMP_RS03355 0.36 -0.6 631,352 + MMP_RS03355 0.37 -1.2
Or see this region's nucleotide sequence