Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03325

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03315 and MMP_RS03320 are separated by 111 nucleotidesMMP_RS03320 and MMP_RS03325 are separated by 180 nucleotidesMMP_RS03325 and MMP_RS03330 are separated by 131 nucleotidesMMP_RS03330 and MMP_RS03335 are separated by 153 nucleotides MMP_RS03315: MMP_RS03315 - ferrous iron transport protein A, at 623,532 to 623,738 _RS03315 MMP_RS03320: MMP_RS03320 - metal-dependent transcriptional regulator, at 623,850 to 624,254 _RS03320 MMP_RS03325: MMP_RS03325 - hypothetical protein, at 624,435 to 625,601 _RS03325 MMP_RS03330: MMP_RS03330 - rubrerythrin family protein, at 625,733 to 626,323 _RS03330 MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670 _RS03335 Position (kb) 624 625 626Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 623.462 kb on - strandat 623.473 kb on + strandat 623.497 kb on + strandat 623.504 kb on + strandat 623.517 kb on - strandat 623.693 kb on - strand, within MMP_RS03315at 623.702 kb on - strand, within MMP_RS03315at 623.704 kb on - strand, within MMP_RS03315at 623.755 kb on - strandat 623.755 kb on - strandat 623.756 kb on + strandat 623.822 kb on - strandat 623.823 kb on + strandat 623.823 kb on + strandat 623.824 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.826 kb on - strandat 623.827 kb on + strandat 623.828 kb on - strandat 623.828 kb on - strandat 623.828 kb on - strandat 623.887 kb on - strandat 623.897 kb on - strand, within MMP_RS03320at 623.901 kb on + strand, within MMP_RS03320at 623.909 kb on - strand, within MMP_RS03320at 624.012 kb on - strand, within MMP_RS03320at 624.023 kb on - strand, within MMP_RS03320at 624.287 kb on - strandat 624.288 kb on + strandat 624.318 kb on + strandat 624.365 kb on - strandat 624.365 kb on - strandat 624.365 kb on - strandat 624.365 kb on - strandat 624.366 kb on + strandat 624.367 kb on - strandat 624.368 kb on + strandat 624.376 kb on - strandat 624.377 kb on + strandat 624.377 kb on + strandat 624.377 kb on + strandat 624.381 kb on + strandat 624.400 kb on - strandat 624.401 kb on + strandat 624.401 kb on + strandat 624.411 kb on - strandat 624.414 kb on - strandat 624.415 kb on + strandat 624.434 kb on - strandat 624.462 kb on + strandat 624.535 kb on - strandat 624.593 kb on + strand, within MMP_RS03325at 624.593 kb on + strand, within MMP_RS03325at 624.775 kb on + strand, within MMP_RS03325at 624.777 kb on + strand, within MMP_RS03325at 624.915 kb on + strand, within MMP_RS03325at 624.990 kb on + strand, within MMP_RS03325at 625.075 kb on - strand, within MMP_RS03325at 625.099 kb on - strand, within MMP_RS03325at 625.432 kb on - strand, within MMP_RS03325at 625.496 kb on + strandat 625.574 kb on - strandat 625.645 kb on - strandat 625.668 kb on - strandat 625.669 kb on + strandat 625.669 kb on + strandat 625.689 kb on - strandat 625.697 kb on + strandat 625.795 kb on - strand, within MMP_RS03330at 625.801 kb on - strand, within MMP_RS03330at 625.801 kb on - strand, within MMP_RS03330at 625.802 kb on + strand, within MMP_RS03330at 625.802 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.815 kb on + strand, within MMP_RS03330at 625.815 kb on + strand, within MMP_RS03330at 625.860 kb on - strand, within MMP_RS03330at 625.909 kb on - strand, within MMP_RS03330at 625.915 kb on + strand, within MMP_RS03330at 625.986 kb on + strand, within MMP_RS03330at 625.993 kb on - strand, within MMP_RS03330at 625.993 kb on - strand, within MMP_RS03330at 625.994 kb on + strand, within MMP_RS03330at 626.088 kb on - strand, within MMP_RS03330at 626.110 kb on + strand, within MMP_RS03330at 626.208 kb on - strand, within MMP_RS03330at 626.209 kb on + strand, within MMP_RS03330at 626.242 kb on + strand, within MMP_RS03330at 626.294 kb on - strandat 626.319 kb on + strandat 626.375 kb on + strandat 626.396 kb on + strandat 626.551 kb on + strandat 626.563 kb on - strandat 626.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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623,462 - +0.8
623,473 + -0.7
623,497 + -0.9
623,504 + +0.2
623,517 - +0.9
623,693 - MMP_RS03315 0.78 -0.8
623,702 - MMP_RS03315 0.82 -0.6
623,704 - MMP_RS03315 0.83 -1.3
623,755 - +0.1
623,755 - -0.2
623,756 + -0.6
623,822 - -1.2
623,823 + -1.1
623,823 + -1.6
623,824 - -3.5
623,826 - -0.2
623,826 - +1.6
623,826 - +0.6
623,826 - -1.3
623,826 - -3.3
623,826 - -0.0
623,827 + -0.4
623,828 - +0.9
623,828 - +1.6
623,828 - -0.5
623,887 - -0.0
623,897 - MMP_RS03320 0.12 +1.0
623,901 + MMP_RS03320 0.13 +0.0
623,909 - MMP_RS03320 0.15 -0.4
624,012 - MMP_RS03320 0.40 +0.2
624,023 - MMP_RS03320 0.43 -0.2
624,287 - -0.2
624,288 + +0.3
624,318 + +0.9
624,365 - -1.0
624,365 - +0.8
624,365 - +1.0
624,365 - +0.7
624,366 + -2.7
624,367 - -0.6
624,368 + +0.3
624,376 - -1.1
624,377 + -2.1
624,377 + +0.4
624,377 + +1.3
624,381 + -1.5
624,400 - +0.8
624,401 + +1.2
624,401 + +0.8
624,411 - +0.9
624,414 - +1.1
624,415 + +1.6
624,434 - -2.5
624,462 + -0.7
624,535 - -0.8
624,593 + MMP_RS03325 0.14 +0.0
624,593 + MMP_RS03325 0.14 +0.5
624,775 + MMP_RS03325 0.29 -0.2
624,777 + MMP_RS03325 0.29 -1.2
624,915 + MMP_RS03325 0.41 -3.4
624,990 + MMP_RS03325 0.48 -0.8
625,075 - MMP_RS03325 0.55 +0.3
625,099 - MMP_RS03325 0.57 +0.9
625,432 - MMP_RS03325 0.85 +0.2
625,496 + -1.1
625,574 - -2.7
625,645 - +1.3
625,668 - +2.2
625,669 + +0.7
625,669 + -1.0
625,689 - -3.5
625,697 + -2.7
625,795 - MMP_RS03330 0.10 -0.7
625,801 - MMP_RS03330 0.12 +0.2
625,801 - MMP_RS03330 0.12 -3.0
625,802 + MMP_RS03330 0.12 +2.0
625,802 + MMP_RS03330 0.12 -0.3
625,808 + MMP_RS03330 0.13 +0.1
625,808 + MMP_RS03330 0.13 +1.5
625,808 + MMP_RS03330 0.13 -3.5
625,812 - MMP_RS03330 0.13 +0.5
625,812 - MMP_RS03330 0.13 +1.0
625,812 - MMP_RS03330 0.13 -0.8
625,812 - MMP_RS03330 0.13 -2.3
625,812 - MMP_RS03330 0.13 -1.8
625,812 - MMP_RS03330 0.13 +1.9
625,813 + MMP_RS03330 0.14 +1.5
625,813 + MMP_RS03330 0.14 +0.7
625,813 + MMP_RS03330 0.14 -0.6
625,813 + MMP_RS03330 0.14 +0.4
625,815 + MMP_RS03330 0.14 -1.6
625,815 + MMP_RS03330 0.14 -2.1
625,860 - MMP_RS03330 0.21 -0.7
625,909 - MMP_RS03330 0.30 -0.2
625,915 + MMP_RS03330 0.31 +2.0
625,986 + MMP_RS03330 0.43 -1.4
625,993 - MMP_RS03330 0.44 +0.6
625,993 - MMP_RS03330 0.44 -0.9
625,994 + MMP_RS03330 0.44 +0.7
626,088 - MMP_RS03330 0.60 +0.6
626,110 + MMP_RS03330 0.64 -1.6
626,208 - MMP_RS03330 0.80 +0.6
626,209 + MMP_RS03330 0.81 +0.2
626,242 + MMP_RS03330 0.86 +1.8
626,294 - +0.1
626,319 + -4.1
626,375 + +0.0
626,396 + +0.5
626,551 + -2.6
626,563 - -0.6
626,581 + -0.6

Or see this region's nucleotide sequence