Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03080 and MMP_RS03085 are separated by 4 nucleotides MMP_RS03085 and MMP_RS03090 are separated by 25 nucleotides MMP_RS03090 and MMP_RS03095 are separated by 116 nucleotides MMP_RS03095 and MMP_RS03100 are separated by 5 nucleotides
MMP_RS03080: MMP_RS03080 - universal stress protein, at 582,112 to 582,549
_RS03080
MMP_RS03085: MMP_RS03085 - endonuclease III, at 582,554 to 583,252
_RS03085
MMP_RS03090: MMP_RS03090 - cation:proton antiporter, at 583,278 to 584,447
_RS03090
MMP_RS03095: MMP_RS03095 - diphthine synthase, at 584,564 to 585,331
_RS03095
MMP_RS03100: MMP_RS03100 - hypothetical protein, at 585,337 to 585,537
_RS03100
Position (kb) 583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 582.359 kb on - strand, within MMP_RS03080 at 582.360 kb on + strand, within MMP_RS03080 at 582.476 kb on - strand, within MMP_RS03080 at 582.477 kb on + strand, within MMP_RS03080 at 582.555 kb on - strand at 582.556 kb on + strand at 582.584 kb on - strand at 582.585 kb on + strand at 582.589 kb on + strand at 582.654 kb on + strand, within MMP_RS03085 at 582.737 kb on + strand, within MMP_RS03085 at 582.740 kb on - strand, within MMP_RS03085 at 582.740 kb on - strand, within MMP_RS03085 at 582.741 kb on + strand, within MMP_RS03085 at 582.755 kb on + strand, within MMP_RS03085 at 582.757 kb on + strand, within MMP_RS03085 at 582.869 kb on - strand, within MMP_RS03085 at 582.921 kb on - strand, within MMP_RS03085 at 582.938 kb on + strand, within MMP_RS03085 at 583.110 kb on - strand, within MMP_RS03085 at 583.365 kb on - strand at 583.396 kb on + strand, within MMP_RS03090 at 583.775 kb on - strand, within MMP_RS03090 at 583.786 kb on + strand, within MMP_RS03090 at 583.786 kb on + strand, within MMP_RS03090 at 583.792 kb on + strand, within MMP_RS03090 at 583.843 kb on + strand, within MMP_RS03090 at 583.845 kb on - strand, within MMP_RS03090 at 583.849 kb on + strand, within MMP_RS03090 at 583.889 kb on - strand, within MMP_RS03090 at 584.135 kb on + strand, within MMP_RS03090 at 584.468 kb on - strand at 584.468 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.514 kb on - strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.515 kb on + strand at 584.516 kb on - strand at 584.516 kb on - strand at 584.516 kb on - strand at 584.517 kb on + strand at 584.518 kb on - strand at 584.518 kb on - strand at 584.519 kb on + strand at 584.519 kb on + strand at 584.522 kb on + strand at 584.540 kb on + strand at 584.546 kb on - strand at 584.547 kb on + strand at 584.592 kb on + strand at 584.609 kb on + strand at 584.609 kb on + strand at 584.673 kb on - strand, within MMP_RS03095 at 584.678 kb on + strand, within MMP_RS03095 at 584.678 kb on + strand, within MMP_RS03095 at 584.725 kb on + strand, within MMP_RS03095 at 584.754 kb on + strand, within MMP_RS03095 at 585.002 kb on - strand, within MMP_RS03095 at 585.071 kb on + strand, within MMP_RS03095 at 585.206 kb on - strand, within MMP_RS03095 at 585.210 kb on + strand, within MMP_RS03095 at 585.401 kb on + strand, within MMP_RS03100
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 582,359 - MMP_RS03080 0.56 -1.8 582,360 + MMP_RS03080 0.57 +0.8 582,476 - MMP_RS03080 0.83 +1.0 582,477 + MMP_RS03080 0.83 +0.6 582,555 - -0.8 582,556 + +0.6 582,584 - +1.4 582,585 + -1.3 582,589 + +0.9 582,654 + MMP_RS03085 0.14 +0.2 582,737 + MMP_RS03085 0.26 +1.3 582,740 - MMP_RS03085 0.27 -0.1 582,740 - MMP_RS03085 0.27 +1.6 582,741 + MMP_RS03085 0.27 -0.9 582,755 + MMP_RS03085 0.29 +0.6 582,757 + MMP_RS03085 0.29 +0.4 582,869 - MMP_RS03085 0.45 -1.4 582,921 - MMP_RS03085 0.53 -1.5 582,938 + MMP_RS03085 0.55 +0.1 583,110 - MMP_RS03085 0.80 -2.8 583,365 - -1.3 583,396 + MMP_RS03090 0.10 -0.3 583,775 - MMP_RS03090 0.42 -3.2 583,786 + MMP_RS03090 0.43 -2.8 583,786 + MMP_RS03090 0.43 +1.0 583,792 + MMP_RS03090 0.44 +0.6 583,843 + MMP_RS03090 0.48 -1.9 583,845 - MMP_RS03090 0.48 -0.5 583,849 + MMP_RS03090 0.49 -2.0 583,889 - MMP_RS03090 0.52 +0.3 584,135 + MMP_RS03090 0.73 -2.0 584,468 - +0.8 584,468 - -1.0 584,514 - -2.5 584,514 - -0.5 584,514 - +0.2 584,514 - -0.2 584,514 - -1.3 584,514 - +0.9 584,514 - +0.5 584,514 - -2.1 584,514 - -1.5 584,514 - -0.3 584,515 + -0.4 584,515 + -0.6 584,515 + -0.0 584,515 + +0.8 584,515 + -2.3 584,515 + -0.2 584,515 + -1.0 584,515 + +0.1 584,516 - -0.3 584,516 - -0.1 584,516 - -2.2 584,517 + +0.8 584,518 - -0.8 584,518 - +1.6 584,519 + +0.4 584,519 + -1.7 584,522 + -1.8 584,540 + +0.9 584,546 - -1.0 584,547 + -1.6 584,592 + -0.1 584,609 + +0.1 584,609 + +0.4 584,673 - MMP_RS03095 0.14 -0.1 584,678 + MMP_RS03095 0.15 -1.4 584,678 + MMP_RS03095 0.15 -1.4 584,725 + MMP_RS03095 0.21 -0.9 584,754 + MMP_RS03095 0.25 -2.5 585,002 - MMP_RS03095 0.57 -1.8 585,071 + MMP_RS03095 0.66 -0.2 585,206 - MMP_RS03095 0.84 +0.3 585,210 + MMP_RS03095 0.84 -0.1 585,401 + MMP_RS03100 0.32 -2.7
Or see this region's nucleotide sequence