Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03015 and MMP_RS03020 are separated by 131 nucleotides MMP_RS03020 and MMP_RS03025 are separated by 110 nucleotides MMP_RS03025 and MMP_RS03030 are separated by 541 nucleotides MMP_RS03030 and MMP_RS03035 are separated by 17 nucleotides
MMP_RS03015: MMP_RS03015 - GTP 3' 8-cyclase MoaA, at 570,696 to 571,589
_RS03015
MMP_RS03020: MMP_RS03020 - peptidylprolyl isomerase, at 571,721 to 572,407
_RS03020
MMP_RS03025: MMP_RS03025 - molybdenum cofactor guanylyltransferase, at 572,518 to 573,162
_RS03025
MMP_RS03030: MMP_RS03030 - Asp-tRNA(Asn) amidotransferase subunit GatC, at 573,704 to 573,943
_RS03030
MMP_RS03035: MMP_RS03035 - 4-hydroxy-tetrahydrodipicolinate synthase, at 573,961 to 574,830
_RS03035
Position (kb) 572
573
574 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 571.668 kb on + strand at 571.709 kb on - strand at 571.723 kb on + strand at 571.863 kb on + strand, within MMP_RS03020 at 571.863 kb on + strand, within MMP_RS03020 at 571.863 kb on + strand, within MMP_RS03020 at 571.868 kb on - strand, within MMP_RS03020 at 571.941 kb on + strand, within MMP_RS03020 at 571.964 kb on - strand, within MMP_RS03020 at 572.054 kb on - strand, within MMP_RS03020 at 572.430 kb on - strand at 572.461 kb on - strand at 572.461 kb on - strand at 572.479 kb on - strand at 572.479 kb on - strand at 572.499 kb on + strand at 572.518 kb on + strand at 572.532 kb on - strand at 572.533 kb on + strand at 572.538 kb on + strand at 572.604 kb on + strand, within MMP_RS03025 at 572.614 kb on + strand, within MMP_RS03025 at 572.714 kb on + strand, within MMP_RS03025 at 572.716 kb on - strand, within MMP_RS03025 at 572.742 kb on - strand, within MMP_RS03025 at 572.867 kb on - strand, within MMP_RS03025 at 572.900 kb on - strand, within MMP_RS03025 at 572.901 kb on + strand, within MMP_RS03025 at 572.918 kb on - strand, within MMP_RS03025 at 572.918 kb on - strand, within MMP_RS03025 at 572.919 kb on + strand, within MMP_RS03025 at 572.919 kb on + strand, within MMP_RS03025 at 572.944 kb on + strand, within MMP_RS03025 at 572.965 kb on - strand, within MMP_RS03025 at 573.107 kb on - strand at 573.107 kb on - strand at 573.107 kb on - strand at 573.111 kb on - strand at 573.128 kb on - strand at 573.172 kb on - strand at 573.193 kb on + strand at 573.193 kb on + strand at 573.200 kb on + strand at 573.200 kb on + strand at 573.200 kb on + strand at 573.228 kb on - strand at 573.260 kb on - strand at 573.290 kb on - strand at 573.309 kb on - strand at 573.310 kb on + strand at 573.310 kb on + strand at 573.350 kb on + strand at 573.354 kb on - strand at 573.381 kb on - strand at 573.396 kb on - strand at 573.396 kb on - strand at 573.396 kb on - strand at 573.424 kb on - strand at 573.425 kb on + strand at 573.425 kb on + strand at 573.425 kb on + strand at 573.426 kb on - strand at 573.426 kb on - strand at 573.427 kb on + strand at 573.428 kb on - strand at 573.429 kb on + strand at 573.526 kb on - strand at 573.527 kb on + strand at 573.562 kb on + strand at 573.565 kb on - strand at 573.565 kb on - strand at 573.565 kb on - strand at 573.566 kb on + strand at 573.566 kb on + strand at 573.604 kb on + strand at 573.754 kb on - strand at 573.943 kb on - strand at 574.069 kb on + strand, within MMP_RS03035
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 571,668 + +1.0 571,709 - -2.7 571,723 + +0.6 571,863 + MMP_RS03020 0.21 -0.2 571,863 + MMP_RS03020 0.21 -1.4 571,863 + MMP_RS03020 0.21 +1.4 571,868 - MMP_RS03020 0.21 -2.6 571,941 + MMP_RS03020 0.32 +0.7 571,964 - MMP_RS03020 0.35 -3.5 572,054 - MMP_RS03020 0.48 -0.0 572,430 - -1.2 572,461 - +0.0 572,461 - +0.3 572,479 - -1.1 572,479 - -0.0 572,499 + -0.5 572,518 + -0.4 572,532 - -0.2 572,533 + -0.0 572,538 + -2.5 572,604 + MMP_RS03025 0.13 -2.3 572,614 + MMP_RS03025 0.15 -2.5 572,714 + MMP_RS03025 0.30 -4.0 572,716 - MMP_RS03025 0.31 -2.1 572,742 - MMP_RS03025 0.35 -2.3 572,867 - MMP_RS03025 0.54 -2.3 572,900 - MMP_RS03025 0.59 -1.0 572,901 + MMP_RS03025 0.59 -1.0 572,918 - MMP_RS03025 0.62 -0.7 572,918 - MMP_RS03025 0.62 -2.0 572,919 + MMP_RS03025 0.62 -0.4 572,919 + MMP_RS03025 0.62 -0.4 572,944 + MMP_RS03025 0.66 -1.4 572,965 - MMP_RS03025 0.69 -2.0 573,107 - -2.2 573,107 - -2.3 573,107 - -1.1 573,111 - -0.1 573,128 - -1.3 573,172 - +1.5 573,193 + -2.2 573,193 + -0.2 573,200 + -2.9 573,200 + +0.6 573,200 + -0.8 573,228 - +0.8 573,260 - +1.7 573,290 - +0.5 573,309 - -1.1 573,310 + -0.7 573,310 + +1.4 573,350 + +0.5 573,354 - +1.2 573,381 - -0.3 573,396 - -2.3 573,396 - +1.2 573,396 - -0.3 573,424 - +0.3 573,425 + +0.3 573,425 + +1.0 573,425 + +1.4 573,426 - +0.6 573,426 - -4.2 573,427 + -2.2 573,428 - +1.2 573,429 + -1.2 573,526 - -0.6 573,527 + -0.1 573,562 + -0.3 573,565 - -0.4 573,565 - -0.0 573,565 - -0.3 573,566 + -4.4 573,566 + +0.6 573,604 + -0.2 573,754 - -1.7 573,943 - -1.3 574,069 + MMP_RS03035 0.12 -0.9
Or see this region's nucleotide sequence