Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02975 and MMP_RS02980 are separated by 63 nucleotides MMP_RS02980 and MMP_RS02985 are separated by 19 nucleotides MMP_RS02985 and MMP_RS02990 are separated by 41 nucleotides
MMP_RS02975: MMP_RS02975 - DUF2124 domain-containing protein, at 563,258 to 563,740
_RS02975
MMP_RS02980: MMP_RS02980 - ATP-grasp domain-containing protein, at 563,804 to 564,712
_RS02980
MMP_RS02985: MMP_RS02985 - hypothetical protein, at 564,732 to 565,655
_RS02985
MMP_RS02990: MMP_RS02990 - AMP-binding protein, at 565,697 to 567,346
_RS02990
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.772 kb on + strand at 563.772 kb on + strand at 563.776 kb on - strand at 563.776 kb on - strand at 563.887 kb on - strand at 564.120 kb on - strand at 564.213 kb on - strand at 564.422 kb on - strand at 564.495 kb on - strand at 564.495 kb on - strand at 564.512 kb on - strand at 564.537 kb on - strand at 564.553 kb on - strand at 564.569 kb on - strand at 564.569 kb on - strand at 564.588 kb on - strand at 564.680 kb on + strand at 564.696 kb on + strand at 564.748 kb on + strand at 564.972 kb on - strand, within MMP_RS02985 at 565.041 kb on + strand, within MMP_RS02985 at 565.269 kb on - strand, within MMP_RS02985 at 565.490 kb on - strand, within MMP_RS02985 at 565.568 kb on - strand at 565.603 kb on + strand at 565.609 kb on - strand at 565.646 kb on - strand at 565.649 kb on + strand at 565.649 kb on + strand at 565.649 kb on + strand at 565.649 kb on + strand at 565.668 kb on + strand at 565.692 kb on + strand at 565.693 kb on - strand at 565.694 kb on + strand at 565.695 kb on - strand at 565.819 kb on - strand at 565.819 kb on - strand at 565.867 kb on - strand, within MMP_RS02990 at 565.875 kb on - strand, within MMP_RS02990 at 565.972 kb on + strand, within MMP_RS02990 at 565.998 kb on - strand, within MMP_RS02990 at 566.345 kb on + strand, within MMP_RS02990 at 566.362 kb on + strand, within MMP_RS02990 at 566.362 kb on + strand, within MMP_RS02990 at 566.365 kb on - strand, within MMP_RS02990 at 566.376 kb on + strand, within MMP_RS02990 at 566.489 kb on + strand, within MMP_RS02990 at 566.500 kb on + strand, within MMP_RS02990 at 566.526 kb on + strand, within MMP_RS02990
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 563,772 + +0.3 563,772 + -1.0 563,776 - -0.6 563,776 - +0.2 563,887 - -3.0 564,120 - -0.7 564,213 - +0.3 564,422 - -2.0 564,495 - -1.4 564,495 - -1.7 564,512 - -2.5 564,537 - -0.9 564,553 - -0.1 564,569 - -0.3 564,569 - +0.2 564,588 - -1.8 564,680 + -1.4 564,696 + +0.4 564,748 + +2.3 564,972 - MMP_RS02985 0.26 -0.5 565,041 + MMP_RS02985 0.33 -1.4 565,269 - MMP_RS02985 0.58 -3.4 565,490 - MMP_RS02985 0.82 +1.6 565,568 - -2.1 565,603 + -0.3 565,609 - +1.6 565,646 - +1.0 565,649 + +0.6 565,649 + -2.7 565,649 + +1.0 565,649 + +0.2 565,668 + -0.2 565,692 + -0.7 565,693 - -1.1 565,694 + -0.2 565,695 - -1.3 565,819 - +2.7 565,819 - -0.3 565,867 - MMP_RS02990 0.10 +1.4 565,875 - MMP_RS02990 0.11 +0.9 565,972 + MMP_RS02990 0.17 +0.7 565,998 - MMP_RS02990 0.18 -2.4 566,345 + MMP_RS02990 0.39 +0.2 566,362 + MMP_RS02990 0.40 -0.1 566,362 + MMP_RS02990 0.40 -0.7 566,365 - MMP_RS02990 0.40 -2.9 566,376 + MMP_RS02990 0.41 +1.4 566,489 + MMP_RS02990 0.48 +0.9 566,500 + MMP_RS02990 0.49 +1.0 566,526 + MMP_RS02990 0.50 -1.3
Or see this region's nucleotide sequence