Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02925 and MMP_RS02930 are separated by 123 nucleotides MMP_RS02930 and MMP_RS02935 are separated by 43 nucleotides MMP_RS02935 and MMP_RS02940 overlap by 4 nucleotides
MMP_RS02925: MMP_RS02925 - ornithine carbamoyltransferase, at 556,641 to 557,555
_RS02925
MMP_RS02930: MMP_RS02930 - class I SAM-dependent methyltransferase, at 557,679 to 558,281
_RS02930
MMP_RS02935: MMP_RS02935 - A24 family peptidase, at 558,325 to 559,017
_RS02935
MMP_RS02940: MMP_RS02940 - TatD family hydrolase, at 559,014 to 559,856
_RS02940
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 557.086 kb on + strand at 557.086 kb on + strand at 557.383 kb on + strand at 557.547 kb on - strand at 557.593 kb on + strand at 557.617 kb on - strand at 557.618 kb on + strand at 557.624 kb on - strand at 557.631 kb on + strand at 557.636 kb on + strand at 557.658 kb on + strand at 557.658 kb on + strand at 557.762 kb on - strand, within MMP_RS02930 at 557.996 kb on - strand, within MMP_RS02930 at 558.073 kb on - strand, within MMP_RS02930 at 558.192 kb on - strand, within MMP_RS02930 at 558.227 kb on - strand at 558.290 kb on - strand at 558.301 kb on - strand at 558.302 kb on + strand at 558.334 kb on - strand at 558.334 kb on - strand at 558.460 kb on + strand, within MMP_RS02935 at 558.616 kb on - strand, within MMP_RS02935 at 558.649 kb on - strand, within MMP_RS02935 at 558.962 kb on + strand at 558.962 kb on + strand at 558.965 kb on - strand at 558.966 kb on + strand at 558.966 kb on + strand at 558.969 kb on + strand at 558.992 kb on - strand at 559.221 kb on - strand, within MMP_RS02940 at 559.272 kb on - strand, within MMP_RS02940
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 557,086 + -2.6 557,086 + -0.6 557,383 + -0.4 557,547 - +0.3 557,593 + -1.6 557,617 - -1.8 557,618 + -2.2 557,624 - -1.9 557,631 + -2.8 557,636 + +0.4 557,658 + -2.2 557,658 + -0.4 557,762 - MMP_RS02930 0.14 -2.4 557,996 - MMP_RS02930 0.53 -0.5 558,073 - MMP_RS02930 0.65 +0.3 558,192 - MMP_RS02930 0.85 -0.7 558,227 - -0.4 558,290 - -0.8 558,301 - +1.5 558,302 + +1.4 558,334 - -0.3 558,334 - +0.3 558,460 + MMP_RS02935 0.19 +1.3 558,616 - MMP_RS02935 0.42 +1.6 558,649 - MMP_RS02935 0.47 +0.3 558,962 + -1.6 558,962 + +1.2 558,965 - -0.4 558,966 + +0.5 558,966 + +0.3 558,969 + +0.3 558,992 - -0.5 559,221 - MMP_RS02940 0.25 +1.1 559,272 - MMP_RS02940 0.31 +1.2
Or see this region's nucleotide sequence