Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02810 and MMP_RS02815 are separated by 114 nucleotides MMP_RS02815 and MMP_RS02820 are separated by 6 nucleotides MMP_RS02820 and MMP_RS02825 are separated by 4 nucleotides
MMP_RS02810: MMP_RS02810 - hypothetical protein, at 536,793 to 538,262
_RS02810
MMP_RS02815: MMP_RS02815 - hypothetical protein, at 538,377 to 538,952
_RS02815
MMP_RS02820: MMP_RS02820 - hypothetical protein, at 538,959 to 539,189
_RS02820
MMP_RS02825: MMP_RS02825 - mechanosensitive ion channel family protein, at 539,194 to 540,276
_RS02825
Position (kb) 538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 537.406 kb on - strand, within MMP_RS02810 at 537.450 kb on - strand, within MMP_RS02810 at 537.450 kb on - strand, within MMP_RS02810 at 537.638 kb on + strand, within MMP_RS02810 at 537.705 kb on + strand, within MMP_RS02810 at 537.976 kb on - strand, within MMP_RS02810 at 538.472 kb on - strand, within MMP_RS02815 at 538.847 kb on + strand, within MMP_RS02815 at 538.976 kb on - strand at 538.977 kb on + strand at 539.376 kb on - strand, within MMP_RS02825 at 539.405 kb on + strand, within MMP_RS02825 at 539.431 kb on - strand, within MMP_RS02825 at 539.435 kb on + strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.439 kb on + strand, within MMP_RS02825 at 539.445 kb on - strand, within MMP_RS02825 at 539.456 kb on + strand, within MMP_RS02825 at 539.614 kb on + strand, within MMP_RS02825 at 539.724 kb on - strand, within MMP_RS02825 at 539.725 kb on + strand, within MMP_RS02825 at 539.766 kb on - strand, within MMP_RS02825 at 539.930 kb on - strand, within MMP_RS02825 at 539.931 kb on + strand, within MMP_RS02825
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 537,406 - MMP_RS02810 0.42 -1.5 537,450 - MMP_RS02810 0.45 -0.9 537,450 - MMP_RS02810 0.45 +1.4 537,638 + MMP_RS02810 0.57 -0.1 537,705 + MMP_RS02810 0.62 +0.4 537,976 - MMP_RS02810 0.80 -2.2 538,472 - MMP_RS02815 0.16 -0.3 538,847 + MMP_RS02815 0.82 -2.1 538,976 - -1.6 538,977 + +0.5 539,376 - MMP_RS02825 0.17 +1.0 539,405 + MMP_RS02825 0.19 -1.2 539,431 - MMP_RS02825 0.22 -0.6 539,435 + MMP_RS02825 0.22 +0.5 539,438 - MMP_RS02825 0.23 +0.0 539,438 - MMP_RS02825 0.23 -1.5 539,438 - MMP_RS02825 0.23 -2.2 539,438 - MMP_RS02825 0.23 -1.2 539,438 - MMP_RS02825 0.23 -0.1 539,439 + MMP_RS02825 0.23 +0.5 539,445 - MMP_RS02825 0.23 -3.5 539,456 + MMP_RS02825 0.24 -0.1 539,614 + MMP_RS02825 0.39 +0.9 539,724 - MMP_RS02825 0.49 -0.6 539,725 + MMP_RS02825 0.49 +0.7 539,766 - MMP_RS02825 0.53 -1.2 539,930 - MMP_RS02825 0.68 +0.5 539,931 + MMP_RS02825 0.68 +0.7
Or see this region's nucleotide sequence