Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02670 and MMP_RS02675 are separated by 16 nucleotides MMP_RS02675 and MMP_RS02680 overlap by 14 nucleotides MMP_RS02680 and MMP_RS02685 are separated by 13 nucleotides
MMP_RS02670: MMP_RS02670 - ATP-binding cassette domain-containing protein, at 508,346 to 509,377
_RS02670
MMP_RS02675: MMP_RS02675 - hypothetical protein, at 509,394 to 510,107
_RS02675
MMP_RS02680: MMP_RS02680 - ABC transporter permease, at 510,094 to 510,894
_RS02680
MMP_RS02685: MMP_RS02685 - molybdate ABC transporter substrate-binding protein, at 510,908 to 511,690
_RS02685
Position (kb) 509
510
511 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 508.448 kb on - strand at 508.448 kb on - strand at 508.449 kb on + strand at 508.449 kb on + strand at 508.523 kb on - strand, within MMP_RS02670 at 508.558 kb on - strand, within MMP_RS02670 at 508.558 kb on - strand, within MMP_RS02670 at 508.645 kb on + strand, within MMP_RS02670 at 508.730 kb on - strand, within MMP_RS02670 at 508.754 kb on + strand, within MMP_RS02670 at 508.761 kb on + strand, within MMP_RS02670 at 508.761 kb on + strand, within MMP_RS02670 at 508.778 kb on - strand, within MMP_RS02670 at 508.779 kb on + strand, within MMP_RS02670 at 508.832 kb on - strand, within MMP_RS02670 at 508.833 kb on + strand, within MMP_RS02670 at 508.835 kb on + strand, within MMP_RS02670 at 508.869 kb on + strand, within MMP_RS02670 at 508.875 kb on - strand, within MMP_RS02670 at 508.895 kb on - strand, within MMP_RS02670 at 508.896 kb on + strand, within MMP_RS02670 at 508.949 kb on - strand, within MMP_RS02670 at 509.047 kb on - strand, within MMP_RS02670 at 509.048 kb on + strand, within MMP_RS02670 at 509.296 kb on + strand at 509.328 kb on - strand at 509.328 kb on - strand at 509.329 kb on + strand at 509.369 kb on - strand at 509.369 kb on - strand at 509.378 kb on - strand at 509.379 kb on + strand at 509.383 kb on + strand at 509.495 kb on + strand, within MMP_RS02675 at 509.586 kb on + strand, within MMP_RS02675 at 509.868 kb on + strand, within MMP_RS02675 at 510.096 kb on + strand at 510.135 kb on - strand at 510.135 kb on - strand at 510.139 kb on - strand at 510.140 kb on + strand at 510.145 kb on - strand at 510.146 kb on + strand at 510.146 kb on + strand at 510.167 kb on + strand at 510.175 kb on - strand, within MMP_RS02680 at 510.448 kb on + strand, within MMP_RS02680 at 510.462 kb on - strand, within MMP_RS02680 at 510.527 kb on + strand, within MMP_RS02680 at 510.659 kb on - strand, within MMP_RS02680 at 510.706 kb on - strand, within MMP_RS02680 at 510.796 kb on - strand, within MMP_RS02680 at 510.821 kb on + strand at 510.941 kb on - strand at 511.021 kb on - strand, within MMP_RS02685 at 511.022 kb on + strand, within MMP_RS02685 at 511.039 kb on - strand, within MMP_RS02685 at 511.040 kb on + strand, within MMP_RS02685 at 511.045 kb on + strand, within MMP_RS02685
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 508,448 - -0.9 508,448 - -0.4 508,449 + -0.9 508,449 + -0.1 508,523 - MMP_RS02670 0.17 -4.6 508,558 - MMP_RS02670 0.21 +0.5 508,558 - MMP_RS02670 0.21 +1.0 508,645 + MMP_RS02670 0.29 +0.0 508,730 - MMP_RS02670 0.37 -4.9 508,754 + MMP_RS02670 0.40 -1.4 508,761 + MMP_RS02670 0.40 -2.6 508,761 + MMP_RS02670 0.40 +1.6 508,778 - MMP_RS02670 0.42 -0.1 508,779 + MMP_RS02670 0.42 -1.6 508,832 - MMP_RS02670 0.47 +0.6 508,833 + MMP_RS02670 0.47 -0.3 508,835 + MMP_RS02670 0.47 -1.2 508,869 + MMP_RS02670 0.51 -3.6 508,875 - MMP_RS02670 0.51 -0.9 508,895 - MMP_RS02670 0.53 +1.3 508,896 + MMP_RS02670 0.53 -0.4 508,949 - MMP_RS02670 0.58 -3.3 509,047 - MMP_RS02670 0.68 -0.3 509,048 + MMP_RS02670 0.68 -1.9 509,296 + -3.2 509,328 - -0.5 509,328 - +0.5 509,329 + -1.9 509,369 - +0.1 509,369 - +0.2 509,378 - -2.0 509,379 + +0.5 509,383 + +0.0 509,495 + MMP_RS02675 0.14 -0.6 509,586 + MMP_RS02675 0.27 +1.5 509,868 + MMP_RS02675 0.66 -1.4 510,096 + -0.1 510,135 - +0.7 510,135 - +0.3 510,139 - -0.5 510,140 + +1.0 510,145 - -2.1 510,146 + +0.7 510,146 + -2.7 510,167 + +0.1 510,175 - MMP_RS02680 0.10 +0.1 510,448 + MMP_RS02680 0.44 +0.4 510,462 - MMP_RS02680 0.46 -3.2 510,527 + MMP_RS02680 0.54 +1.9 510,659 - MMP_RS02680 0.71 +0.7 510,706 - MMP_RS02680 0.76 +1.1 510,796 - MMP_RS02680 0.88 -1.8 510,821 + -0.2 510,941 - +0.4 511,021 - MMP_RS02685 0.14 +0.9 511,022 + MMP_RS02685 0.15 +0.7 511,039 - MMP_RS02685 0.17 +0.5 511,040 + MMP_RS02685 0.17 -0.4 511,045 + MMP_RS02685 0.17 +1.7
Or see this region's nucleotide sequence