Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02600 and MMP_RS02605 overlap by 7 nucleotides MMP_RS02605 and MMP_RS02610 overlap by 1 nucleotides MMP_RS02610 and MMP_RS02615 are separated by 355 nucleotides
MMP_RS02600: MMP_RS02600 - DUF2149 domain-containing protein, at 487,189 to 487,527
_RS02600
MMP_RS02605: MMP_RS02605 - MotA/TolQ/ExbB proton channel family protein, at 487,521 to 488,162
_RS02605
MMP_RS02610: MMP_RS02610 - DUF2162 domain-containing protein, at 488,162 to 488,881
_RS02610
MMP_RS02615: MMP_RS02615 - cobaltochelatase subunit CobN, at 489,237 to 495,425
_RS02615
Position (kb)
488
489 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 487.209 kb on - strand at 487.979 kb on - strand, within MMP_RS02605 at 488.214 kb on - strand at 488.219 kb on - strand at 488.219 kb on - strand at 488.219 kb on - strand at 488.278 kb on + strand, within MMP_RS02610 at 488.660 kb on - strand, within MMP_RS02610 at 488.762 kb on - strand, within MMP_RS02610 at 488.762 kb on - strand, within MMP_RS02610 at 488.769 kb on + strand, within MMP_RS02610 at 488.921 kb on + strand at 489.039 kb on - strand at 489.095 kb on - strand at 489.115 kb on + strand at 489.115 kb on + strand at 489.115 kb on + strand at 489.118 kb on + strand at 489.119 kb on - strand at 489.120 kb on + strand at 489.121 kb on - strand at 489.136 kb on + strand at 489.137 kb on - strand at 489.137 kb on - strand at 489.148 kb on - strand at 489.198 kb on - strand at 489.309 kb on + strand at 489.309 kb on + strand at 489.440 kb on - strand at 489.443 kb on - strand at 489.488 kb on - strand at 489.488 kb on - strand at 489.489 kb on + strand at 489.495 kb on + strand at 489.590 kb on - strand at 489.597 kb on + strand at 489.649 kb on - strand at 489.651 kb on - strand at 489.651 kb on - strand at 489.685 kb on + strand at 489.685 kb on + strand at 489.699 kb on - strand at 489.714 kb on + strand at 489.843 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 487,209 - -0.7 487,979 - MMP_RS02605 0.71 -0.1 488,214 - +1.3 488,219 - +1.7 488,219 - -0.2 488,219 - +1.8 488,278 + MMP_RS02610 0.16 -0.7 488,660 - MMP_RS02610 0.69 +1.7 488,762 - MMP_RS02610 0.83 -1.6 488,762 - MMP_RS02610 0.83 -2.1 488,769 + MMP_RS02610 0.84 -3.4 488,921 + +1.1 489,039 - +1.5 489,095 - +1.1 489,115 + -0.3 489,115 + +0.1 489,115 + -0.8 489,118 + +1.0 489,119 - -2.9 489,120 + -1.9 489,121 - -1.2 489,136 + +1.8 489,137 - +1.8 489,137 - -0.9 489,148 - -1.3 489,198 - +1.3 489,309 + +1.1 489,309 + +0.5 489,440 - -2.4 489,443 - +0.2 489,488 - +1.2 489,488 - -0.6 489,489 + +0.8 489,495 + +0.5 489,590 - +0.2 489,597 + +0.6 489,649 - -2.3 489,651 - +1.6 489,651 - -2.0 489,685 + +0.6 489,685 + -0.1 489,699 - -2.8 489,714 + +1.1 489,843 - -2.3
Or see this region's nucleotide sequence