Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02580 and MMP_RS02585 are separated by 230 nucleotides MMP_RS02585 and MMP_RS02590 are separated by 86 nucleotides MMP_RS02590 and MMP_RS02595 are separated by 212 nucleotides
MMP_RS02580: MMP_RS02580 - cupin domain-containing protein, at 482,858 to 483,295
_RS02580
MMP_RS02585: MMP_RS02585 - methyl-accepting chemotaxis protein, at 483,526 to 485,715
_RS02585
MMP_RS02590: MMP_RS02590 - low molecular weight phosphatase family protein, at 485,802 to 486,212
_RS02590
MMP_RS02595: MMP_RS02595 - putative zinc-binding protein, at 486,425 to 486,886
_RS02595
Position (kb) 483
484
485
486 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 482.544 kb on - strand at 482.677 kb on - strand at 482.756 kb on - strand at 482.756 kb on - strand at 482.756 kb on - strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.757 kb on + strand at 482.758 kb on - strand at 482.758 kb on - strand at 482.758 kb on - strand at 482.759 kb on + strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.760 kb on - strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.761 kb on + strand at 482.762 kb on - strand at 482.762 kb on - strand at 482.762 kb on - strand at 482.824 kb on + strand at 482.864 kb on - strand at 482.896 kb on - strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.897 kb on + strand at 482.936 kb on - strand, within MMP_RS02580 at 482.937 kb on + strand, within MMP_RS02580 at 482.959 kb on + strand, within MMP_RS02580 at 483.026 kb on + strand, within MMP_RS02580 at 483.031 kb on - strand, within MMP_RS02580 at 483.032 kb on + strand, within MMP_RS02580 at 483.152 kb on - strand, within MMP_RS02580 at 483.168 kb on - strand, within MMP_RS02580 at 483.169 kb on + strand, within MMP_RS02580 at 483.279 kb on + strand at 483.284 kb on + strand at 483.297 kb on - strand at 483.320 kb on - strand at 483.358 kb on - strand at 483.359 kb on + strand at 483.361 kb on + strand at 483.363 kb on - strand at 483.364 kb on + strand at 483.413 kb on - strand at 483.436 kb on - strand at 483.436 kb on - strand at 483.436 kb on - strand at 483.437 kb on + strand at 483.450 kb on + strand at 483.451 kb on - strand at 483.451 kb on - strand at 483.499 kb on - strand at 483.500 kb on + strand at 483.500 kb on + strand at 483.503 kb on + strand at 483.514 kb on - strand at 483.515 kb on + strand at 483.515 kb on + strand at 483.523 kb on - strand at 483.523 kb on - strand at 483.524 kb on + strand at 483.534 kb on + strand at 483.560 kb on - strand at 483.566 kb on - strand at 483.570 kb on - strand at 483.571 kb on + strand at 483.749 kb on - strand, within MMP_RS02585 at 483.749 kb on - strand, within MMP_RS02585 at 483.754 kb on + strand, within MMP_RS02585 at 483.849 kb on - strand, within MMP_RS02585 at 483.849 kb on - strand, within MMP_RS02585 at 483.867 kb on - strand, within MMP_RS02585 at 483.867 kb on - strand, within MMP_RS02585 at 483.868 kb on + strand, within MMP_RS02585 at 483.868 kb on + strand, within MMP_RS02585 at 483.868 kb on + strand, within MMP_RS02585 at 483.868 kb on + strand, within MMP_RS02585 at 483.871 kb on + strand, within MMP_RS02585 at 483.871 kb on + strand, within MMP_RS02585 at 483.871 kb on + strand, within MMP_RS02585 at 483.998 kb on - strand, within MMP_RS02585 at 484.002 kb on - strand, within MMP_RS02585 at 484.064 kb on - strand, within MMP_RS02585 at 484.239 kb on - strand, within MMP_RS02585 at 484.239 kb on - strand, within MMP_RS02585 at 484.241 kb on - strand, within MMP_RS02585 at 484.242 kb on + strand, within MMP_RS02585 at 484.262 kb on + strand, within MMP_RS02585 at 484.296 kb on - strand, within MMP_RS02585 at 484.337 kb on - strand, within MMP_RS02585 at 484.344 kb on - strand, within MMP_RS02585 at 484.347 kb on - strand, within MMP_RS02585 at 484.349 kb on - strand, within MMP_RS02585 at 484.386 kb on - strand, within MMP_RS02585 at 484.416 kb on + strand, within MMP_RS02585 at 484.459 kb on - strand, within MMP_RS02585 at 484.460 kb on + strand, within MMP_RS02585 at 484.460 kb on + strand, within MMP_RS02585 at 484.460 kb on + strand, within MMP_RS02585 at 484.532 kb on + strand, within MMP_RS02585 at 484.790 kb on - strand, within MMP_RS02585 at 484.791 kb on + strand, within MMP_RS02585 at 484.827 kb on - strand, within MMP_RS02585 at 484.972 kb on - strand, within MMP_RS02585 at 485.327 kb on - strand, within MMP_RS02585 at 485.335 kb on + strand, within MMP_RS02585 at 485.335 kb on + strand, within MMP_RS02585 at 485.685 kb on + strand at 485.689 kb on + strand at 485.754 kb on + strand at 485.783 kb on - strand at 485.844 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.898 kb on - strand, within MMP_RS02590 at 485.899 kb on + strand, within MMP_RS02590 at 485.965 kb on + strand, within MMP_RS02590 at 485.965 kb on + strand, within MMP_RS02590 at 485.993 kb on - strand, within MMP_RS02590 at 486.169 kb on + strand, within MMP_RS02590 at 486.207 kb on + strand at 486.232 kb on - strand at 486.244 kb on - strand at 486.249 kb on - strand at 486.249 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.253 kb on - strand at 486.254 kb on + strand at 486.254 kb on + strand at 486.255 kb on - strand at 486.255 kb on - strand at 486.256 kb on + strand at 486.269 kb on - strand at 486.269 kb on - strand at 486.270 kb on + strand at 486.271 kb on - strand at 486.271 kb on - strand at 486.272 kb on + strand at 486.281 kb on - strand at 486.291 kb on - strand at 486.292 kb on + strand at 486.293 kb on - strand at 486.319 kb on - strand at 486.346 kb on - strand at 486.347 kb on + strand at 486.712 kb on - strand, within MMP_RS02595
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 482,544 - +1.2 482,677 - +1.6 482,756 - -2.0 482,756 - +0.1 482,756 - -0.7 482,757 + +0.5 482,757 + -2.6 482,757 + +0.5 482,757 + -0.8 482,757 + -2.5 482,758 - -1.6 482,758 - +1.3 482,758 - +0.5 482,759 + +1.1 482,760 - +0.2 482,760 - -0.7 482,760 - +0.2 482,760 - +1.6 482,761 + +0.7 482,761 + +0.7 482,761 + +1.7 482,761 + -2.1 482,761 + +1.1 482,761 + +0.7 482,761 + -1.0 482,761 + +0.5 482,762 - -0.1 482,762 - -1.0 482,762 - +0.3 482,824 + -1.9 482,864 - -0.3 482,896 - -2.9 482,897 + +0.1 482,897 + +1.0 482,897 + -2.2 482,897 + +1.3 482,936 - MMP_RS02580 0.18 +0.6 482,937 + MMP_RS02580 0.18 -0.8 482,959 + MMP_RS02580 0.23 -0.7 483,026 + MMP_RS02580 0.38 +0.7 483,031 - MMP_RS02580 0.39 +1.4 483,032 + MMP_RS02580 0.40 -1.1 483,152 - MMP_RS02580 0.67 -2.9 483,168 - MMP_RS02580 0.71 -0.9 483,169 + MMP_RS02580 0.71 -2.4 483,279 + +1.2 483,284 + +0.5 483,297 - -1.1 483,320 - +0.4 483,358 - +0.2 483,359 + -0.1 483,361 + -3.4 483,363 - +0.6 483,364 + +1.2 483,413 - +0.9 483,436 - +2.1 483,436 - +1.0 483,436 - +0.9 483,437 + +0.3 483,450 + -1.9 483,451 - -2.6 483,451 - -0.3 483,499 - -0.6 483,500 + +1.2 483,500 + +0.6 483,503 + -2.3 483,514 - -0.8 483,515 + -0.6 483,515 + +0.9 483,523 - +1.8 483,523 - +0.4 483,524 + +1.1 483,534 + +1.2 483,560 - -0.2 483,566 - +0.0 483,570 - -1.9 483,571 + +0.8 483,749 - MMP_RS02585 0.10 -1.1 483,749 - MMP_RS02585 0.10 +0.9 483,754 + MMP_RS02585 0.10 +1.0 483,849 - MMP_RS02585 0.15 +0.4 483,849 - MMP_RS02585 0.15 +1.3 483,867 - MMP_RS02585 0.16 -2.0 483,867 - MMP_RS02585 0.16 +1.0 483,868 + MMP_RS02585 0.16 +0.7 483,868 + MMP_RS02585 0.16 +1.8 483,868 + MMP_RS02585 0.16 +1.2 483,868 + MMP_RS02585 0.16 +1.3 483,871 + MMP_RS02585 0.16 -2.6 483,871 + MMP_RS02585 0.16 +1.6 483,871 + MMP_RS02585 0.16 -1.3 483,998 - MMP_RS02585 0.22 -0.6 484,002 - MMP_RS02585 0.22 +1.8 484,064 - MMP_RS02585 0.25 +0.8 484,239 - MMP_RS02585 0.33 +0.4 484,239 - MMP_RS02585 0.33 +0.5 484,241 - MMP_RS02585 0.33 -0.1 484,242 + MMP_RS02585 0.33 +1.8 484,262 + MMP_RS02585 0.34 +0.2 484,296 - MMP_RS02585 0.35 -0.2 484,337 - MMP_RS02585 0.37 +2.0 484,344 - MMP_RS02585 0.37 -1.2 484,347 - MMP_RS02585 0.37 -1.1 484,349 - MMP_RS02585 0.38 +1.2 484,386 - MMP_RS02585 0.39 -0.8 484,416 + MMP_RS02585 0.41 -0.3 484,459 - MMP_RS02585 0.43 -0.1 484,460 + MMP_RS02585 0.43 +1.5 484,460 + MMP_RS02585 0.43 +0.8 484,460 + MMP_RS02585 0.43 +1.2 484,532 + MMP_RS02585 0.46 -1.8 484,790 - MMP_RS02585 0.58 -1.1 484,791 + MMP_RS02585 0.58 +1.0 484,827 - MMP_RS02585 0.59 +1.6 484,972 - MMP_RS02585 0.66 +0.6 485,327 - MMP_RS02585 0.82 +0.9 485,335 + MMP_RS02585 0.83 +1.2 485,335 + MMP_RS02585 0.83 +0.6 485,685 + +1.6 485,689 + +0.8 485,754 + -0.2 485,783 - +0.4 485,844 - MMP_RS02590 0.10 -1.4 485,898 - MMP_RS02590 0.23 +1.9 485,898 - MMP_RS02590 0.23 -1.6 485,898 - MMP_RS02590 0.23 +0.8 485,898 - MMP_RS02590 0.23 +0.9 485,898 - MMP_RS02590 0.23 +0.6 485,898 - MMP_RS02590 0.23 -1.5 485,899 + MMP_RS02590 0.24 +0.0 485,965 + MMP_RS02590 0.40 -1.0 485,965 + MMP_RS02590 0.40 +0.4 485,993 - MMP_RS02590 0.46 +1.4 486,169 + MMP_RS02590 0.89 -0.1 486,207 + +0.0 486,232 - +0.3 486,244 - +0.4 486,249 - +0.4 486,249 - +1.0 486,253 - +1.3 486,253 - -2.1 486,253 - +0.1 486,254 + -2.4 486,254 + +2.1 486,255 - +1.2 486,255 - +0.4 486,256 + -1.1 486,269 - +0.5 486,269 - +1.5 486,270 + +0.1 486,271 - -1.2 486,271 - +1.4 486,272 + +0.7 486,281 - -1.1 486,291 - +1.3 486,292 + -2.9 486,293 - +1.5 486,319 - -1.5 486,346 - -2.6 486,347 + -1.0 486,712 - MMP_RS02595 0.62 +1.8
Or see this region's nucleotide sequence