Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02560

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02555 and MMP_RS02560 are separated by 367 nucleotidesMMP_RS02560 and MMP_RS02565 overlap by 8 nucleotidesMMP_RS02565 and MMP_RS02570 are separated by 275 nucleotides MMP_RS02555: MMP_RS02555 - AIPR family protein, at 476,251 to 478,203 _RS02555 MMP_RS02560: MMP_RS02560 - DUF2283 domain-containing protein, at 478,571 to 478,954 _RS02560 MMP_RS02565: MMP_RS02565 - hypothetical protein, at 478,947 to 479,240 _RS02565 MMP_RS02570: MMP_RS02570 - cation:proton antiporter, at 479,516 to 481,144 _RS02570 Position (kb) 478 479Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 477.571 kb on - strand, within MMP_RS02555at 477.604 kb on - strand, within MMP_RS02555at 477.726 kb on - strand, within MMP_RS02555at 477.857 kb on + strand, within MMP_RS02555at 477.868 kb on + strand, within MMP_RS02555at 477.925 kb on - strand, within MMP_RS02555at 477.926 kb on + strand, within MMP_RS02555at 477.947 kb on + strand, within MMP_RS02555at 477.949 kb on - strand, within MMP_RS02555at 477.949 kb on - strand, within MMP_RS02555at 477.949 kb on - strand, within MMP_RS02555at 477.950 kb on + strand, within MMP_RS02555at 477.950 kb on + strand, within MMP_RS02555at 477.953 kb on - strand, within MMP_RS02555at 477.953 kb on - strand, within MMP_RS02555at 477.954 kb on + strand, within MMP_RS02555at 477.956 kb on - strand, within MMP_RS02555at 477.957 kb on + strand, within MMP_RS02555at 477.957 kb on + strand, within MMP_RS02555at 477.957 kb on + strand, within MMP_RS02555at 477.958 kb on - strand, within MMP_RS02555at 477.958 kb on - strand, within MMP_RS02555at 477.958 kb on - strand, within MMP_RS02555at 477.958 kb on - strand, within MMP_RS02555at 477.958 kb on - strand, within MMP_RS02555at 477.959 kb on + strand, within MMP_RS02555at 477.959 kb on + strand, within MMP_RS02555at 477.959 kb on + strand, within MMP_RS02555at 477.959 kb on + strand, within MMP_RS02555at 477.959 kb on + strand, within MMP_RS02555at 477.994 kb on - strand, within MMP_RS02555at 477.995 kb on + strand, within MMP_RS02555at 477.996 kb on - strand, within MMP_RS02555at 477.997 kb on + strand, within MMP_RS02555at 478.027 kb on + strandat 478.075 kb on - strandat 478.078 kb on - strandat 478.078 kb on - strandat 478.162 kb on - strandat 478.176 kb on - strandat 478.229 kb on - strandat 478.241 kb on + strandat 478.255 kb on + strandat 478.314 kb on + strandat 478.339 kb on - strandat 478.343 kb on - strandat 478.417 kb on + strandat 478.492 kb on - strandat 478.495 kb on + strandat 478.495 kb on + strandat 478.602 kb on + strandat 478.623 kb on - strand, within MMP_RS02560at 478.631 kb on - strand, within MMP_RS02560at 478.637 kb on + strand, within MMP_RS02560at 478.638 kb on - strand, within MMP_RS02560at 478.639 kb on + strand, within MMP_RS02560at 478.647 kb on - strand, within MMP_RS02560at 478.722 kb on + strand, within MMP_RS02560at 478.722 kb on + strand, within MMP_RS02560at 478.722 kb on + strand, within MMP_RS02560at 478.730 kb on - strand, within MMP_RS02560at 478.730 kb on - strand, within MMP_RS02560at 478.731 kb on + strand, within MMP_RS02560at 478.731 kb on + strand, within MMP_RS02560at 478.778 kb on - strand, within MMP_RS02560at 478.856 kb on - strand, within MMP_RS02560at 478.870 kb on + strand, within MMP_RS02560at 478.896 kb on - strand, within MMP_RS02560at 478.897 kb on + strand, within MMP_RS02560at 478.899 kb on + strand, within MMP_RS02560at 478.899 kb on + strand, within MMP_RS02560at 478.970 kb on - strandat 479.027 kb on - strand, within MMP_RS02565at 479.028 kb on + strand, within MMP_RS02565at 479.036 kb on - strand, within MMP_RS02565at 479.036 kb on - strand, within MMP_RS02565at 479.037 kb on + strand, within MMP_RS02565at 479.042 kb on - strand, within MMP_RS02565at 479.045 kb on - strand, within MMP_RS02565at 479.046 kb on + strand, within MMP_RS02565at 479.046 kb on + strand, within MMP_RS02565at 479.060 kb on + strand, within MMP_RS02565at 479.062 kb on - strand, within MMP_RS02565at 479.062 kb on - strand, within MMP_RS02565at 479.063 kb on + strand, within MMP_RS02565at 479.064 kb on - strand, within MMP_RS02565at 479.064 kb on - strand, within MMP_RS02565at 479.065 kb on + strand, within MMP_RS02565at 479.076 kb on + strand, within MMP_RS02565at 479.135 kb on - strand, within MMP_RS02565at 479.136 kb on + strand, within MMP_RS02565at 479.137 kb on - strand, within MMP_RS02565at 479.138 kb on + strand, within MMP_RS02565at 479.157 kb on - strand, within MMP_RS02565at 479.254 kb on + strandat 479.261 kb on - strandat 479.262 kb on + strandat 479.263 kb on - strandat 479.264 kb on + strandat 479.265 kb on - strandat 479.281 kb on + strandat 479.296 kb on + strandat 479.303 kb on + strandat 479.328 kb on - strandat 479.328 kb on - strandat 479.335 kb on - strandat 479.346 kb on - strandat 479.351 kb on + strandat 479.440 kb on + strandat 479.442 kb on + strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.445 kb on - strandat 479.446 kb on + strandat 479.446 kb on + strandat 479.446 kb on + strandat 479.448 kb on + strandat 479.448 kb on + strandat 479.561 kb on - strandat 479.717 kb on - strand, within MMP_RS02570at 479.726 kb on + strand, within MMP_RS02570at 479.748 kb on + strand, within MMP_RS02570at 479.809 kb on - strand, within MMP_RS02570at 479.810 kb on + strand, within MMP_RS02570at 479.810 kb on + strand, within MMP_RS02570at 479.810 kb on + strand, within MMP_RS02570at 479.863 kb on + strand, within MMP_RS02570at 479.913 kb on - strand, within MMP_RS02570at 479.920 kb on - strand, within MMP_RS02570

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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477,571 - MMP_RS02555 0.68 +1.4
477,604 - MMP_RS02555 0.69 +0.6
477,726 - MMP_RS02555 0.76 -4.0
477,857 + MMP_RS02555 0.82 +0.5
477,868 + MMP_RS02555 0.83 +0.8
477,925 - MMP_RS02555 0.86 -0.1
477,926 + MMP_RS02555 0.86 -3.1
477,947 + MMP_RS02555 0.87 -0.8
477,949 - MMP_RS02555 0.87 +1.6
477,949 - MMP_RS02555 0.87 +1.9
477,949 - MMP_RS02555 0.87 +1.0
477,950 + MMP_RS02555 0.87 -2.1
477,950 + MMP_RS02555 0.87 -4.5
477,953 - MMP_RS02555 0.87 +2.1
477,953 - MMP_RS02555 0.87 +0.8
477,954 + MMP_RS02555 0.87 -0.1
477,956 - MMP_RS02555 0.87 -3.5
477,957 + MMP_RS02555 0.87 +0.0
477,957 + MMP_RS02555 0.87 +0.4
477,957 + MMP_RS02555 0.87 +1.5
477,958 - MMP_RS02555 0.87 -2.3
477,958 - MMP_RS02555 0.87 +1.9
477,958 - MMP_RS02555 0.87 +0.7
477,958 - MMP_RS02555 0.87 +0.4
477,958 - MMP_RS02555 0.87 -1.5
477,959 + MMP_RS02555 0.87 -0.3
477,959 + MMP_RS02555 0.87 -3.3
477,959 + MMP_RS02555 0.87 -0.1
477,959 + MMP_RS02555 0.87 +0.4
477,959 + MMP_RS02555 0.87 +0.0
477,994 - MMP_RS02555 0.89 -0.1
477,995 + MMP_RS02555 0.89 +0.6
477,996 - MMP_RS02555 0.89 +0.9
477,997 + MMP_RS02555 0.89 -1.3
478,027 + +1.4
478,075 - -4.1
478,078 - +1.1
478,078 - -2.0
478,162 - +0.1
478,176 - -3.3
478,229 - +0.6
478,241 + -0.2
478,255 + +0.3
478,314 + -2.2
478,339 - +1.1
478,343 - +0.8
478,417 + -0.8
478,492 - +1.9
478,495 + -0.0
478,495 + -3.4
478,602 + -1.2
478,623 - MMP_RS02560 0.14 -0.7
478,631 - MMP_RS02560 0.16 +0.3
478,637 + MMP_RS02560 0.17 -0.1
478,638 - MMP_RS02560 0.17 -1.9
478,639 + MMP_RS02560 0.18 -1.0
478,647 - MMP_RS02560 0.20 +1.7
478,722 + MMP_RS02560 0.39 -2.1
478,722 + MMP_RS02560 0.39 +0.9
478,722 + MMP_RS02560 0.39 -0.9
478,730 - MMP_RS02560 0.41 +1.7
478,730 - MMP_RS02560 0.41 +0.3
478,731 + MMP_RS02560 0.42 -1.1
478,731 + MMP_RS02560 0.42 -1.6
478,778 - MMP_RS02560 0.54 -0.1
478,856 - MMP_RS02560 0.74 -1.9
478,870 + MMP_RS02560 0.78 -0.7
478,896 - MMP_RS02560 0.85 -3.7
478,897 + MMP_RS02560 0.85 +0.5
478,899 + MMP_RS02560 0.85 -4.1
478,899 + MMP_RS02560 0.85 +0.1
478,970 - -0.4
479,027 - MMP_RS02565 0.27 -2.3
479,028 + MMP_RS02565 0.28 +1.2
479,036 - MMP_RS02565 0.30 -0.9
479,036 - MMP_RS02565 0.30 +1.0
479,037 + MMP_RS02565 0.31 -0.7
479,042 - MMP_RS02565 0.32 +1.4
479,045 - MMP_RS02565 0.33 +1.1
479,046 + MMP_RS02565 0.34 +2.1
479,046 + MMP_RS02565 0.34 -1.2
479,060 + MMP_RS02565 0.38 -1.9
479,062 - MMP_RS02565 0.39 +0.5
479,062 - MMP_RS02565 0.39 -1.8
479,063 + MMP_RS02565 0.39 +0.4
479,064 - MMP_RS02565 0.40 -2.0
479,064 - MMP_RS02565 0.40 +2.6
479,065 + MMP_RS02565 0.40 -0.0
479,076 + MMP_RS02565 0.44 -3.7
479,135 - MMP_RS02565 0.64 -0.9
479,136 + MMP_RS02565 0.64 -1.1
479,137 - MMP_RS02565 0.65 -0.3
479,138 + MMP_RS02565 0.65 -1.1
479,157 - MMP_RS02565 0.71 +1.1
479,254 + +0.7
479,261 - +2.1
479,262 + +1.1
479,263 - +1.7
479,264 + +0.5
479,265 - +1.3
479,281 + +1.9
479,296 + -0.4
479,303 + -3.9
479,328 - +0.1
479,328 - +0.5
479,335 - -2.3
479,346 - +0.8
479,351 + +1.3
479,440 + +0.6
479,442 + +0.1
479,445 - +1.3
479,445 - +1.4
479,445 - +1.8
479,445 - -1.2
479,445 - -3.1
479,445 - +0.8
479,446 + -1.0
479,446 + +0.1
479,446 + +1.4
479,448 + +1.2
479,448 + +0.8
479,561 - +0.1
479,717 - MMP_RS02570 0.12 +0.1
479,726 + MMP_RS02570 0.13 +0.8
479,748 + MMP_RS02570 0.14 -3.3
479,809 - MMP_RS02570 0.18 +1.2
479,810 + MMP_RS02570 0.18 -1.6
479,810 + MMP_RS02570 0.18 +1.1
479,810 + MMP_RS02570 0.18 +0.9
479,863 + MMP_RS02570 0.21 +0.1
479,913 - MMP_RS02570 0.24 +0.7
479,920 - MMP_RS02570 0.25 +1.7

Or see this region's nucleotide sequence