Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02445 and MMP_RS02450 are separated by 273 nucleotides MMP_RS02450 and MMP_RS02455 are separated by 12 nucleotides MMP_RS02455 and MMP_RS02460 are separated by 165 nucleotides
MMP_RS02445: MMP_RS02445 - putative DNA binding domain-containing protein, at 456,701 to 458,044
_RS02445
MMP_RS02450: MMP_RS02450 - hypothetical protein, at 458,318 to 458,512
_RS02450
MMP_RS02455: MMP_RS02455 - hypothetical protein, at 458,525 to 459,142
_RS02455
MMP_RS02460: MMP_RS02460 - hypothetical protein, at 459,308 to 462,367
_RS02460
Position (kb) 458
459
460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 457.560 kb on - strand, within MMP_RS02445 at 457.561 kb on + strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.564 kb on - strand, within MMP_RS02445 at 457.565 kb on + strand, within MMP_RS02445 at 457.565 kb on + strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.566 kb on - strand, within MMP_RS02445 at 457.567 kb on + strand, within MMP_RS02445 at 457.567 kb on + strand, within MMP_RS02445 at 457.605 kb on - strand, within MMP_RS02445 at 457.606 kb on + strand, within MMP_RS02445 at 457.611 kb on - strand, within MMP_RS02445 at 457.611 kb on - strand, within MMP_RS02445 at 457.622 kb on - strand, within MMP_RS02445 at 457.675 kb on + strand, within MMP_RS02445 at 457.716 kb on - strand, within MMP_RS02445 at 457.879 kb on + strand, within MMP_RS02445 at 457.919 kb on + strand at 457.932 kb on - strand at 457.942 kb on - strand at 457.943 kb on + strand at 457.996 kb on + strand at 457.996 kb on + strand at 458.048 kb on + strand at 458.048 kb on + strand at 458.048 kb on + strand at 458.054 kb on + strand at 458.054 kb on + strand at 458.064 kb on - strand at 458.087 kb on + strand at 458.098 kb on + strand at 458.136 kb on + strand at 458.136 kb on + strand at 458.214 kb on - strand at 458.231 kb on + strand at 458.250 kb on + strand at 458.308 kb on - strand at 458.347 kb on + strand, within MMP_RS02450 at 458.361 kb on - strand, within MMP_RS02450 at 458.371 kb on - strand, within MMP_RS02450 at 458.392 kb on - strand, within MMP_RS02450 at 458.392 kb on - strand, within MMP_RS02450 at 458.398 kb on + strand, within MMP_RS02450 at 458.398 kb on + strand, within MMP_RS02450 at 458.403 kb on + strand, within MMP_RS02450 at 458.468 kb on + strand, within MMP_RS02450 at 458.532 kb on + strand at 458.628 kb on - strand, within MMP_RS02455 at 458.629 kb on + strand, within MMP_RS02455 at 458.630 kb on - strand, within MMP_RS02455 at 458.760 kb on + strand, within MMP_RS02455 at 458.783 kb on - strand, within MMP_RS02455 at 458.787 kb on - strand, within MMP_RS02455 at 458.787 kb on - strand, within MMP_RS02455 at 458.960 kb on + strand, within MMP_RS02455 at 458.963 kb on - strand, within MMP_RS02455 at 458.974 kb on - strand, within MMP_RS02455 at 458.974 kb on - strand, within MMP_RS02455 at 458.996 kb on + strand, within MMP_RS02455 at 459.136 kb on - strand at 459.212 kb on + strand at 459.241 kb on - strand at 459.255 kb on - strand at 459.288 kb on - strand at 459.307 kb on + strand at 459.321 kb on - strand at 459.344 kb on - strand at 459.345 kb on + strand at 459.378 kb on + strand at 459.409 kb on - strand at 459.409 kb on - strand at 459.409 kb on - strand at 459.410 kb on + strand at 459.411 kb on - strand at 459.446 kb on + strand at 459.448 kb on - strand at 459.448 kb on - strand at 459.448 kb on - strand at 459.449 kb on + strand at 459.451 kb on - strand at 459.452 kb on + strand at 459.452 kb on + strand at 459.452 kb on + strand at 459.452 kb on + strand at 459.453 kb on - strand at 459.453 kb on - strand at 459.454 kb on + strand at 459.457 kb on - strand at 459.457 kb on - strand at 459.457 kb on - strand at 459.458 kb on + strand at 459.482 kb on - strand at 459.482 kb on - strand at 459.482 kb on - strand at 459.502 kb on - strand at 459.502 kb on - strand at 459.515 kb on - strand at 459.519 kb on - strand at 459.520 kb on + strand at 459.520 kb on + strand at 459.520 kb on + strand at 459.520 kb on + strand at 459.520 kb on + strand at 459.520 kb on + strand at 459.546 kb on - strand at 459.546 kb on - strand at 459.547 kb on + strand at 459.550 kb on - strand at 459.596 kb on - strand at 459.659 kb on + strand, within MMP_RS02460 at 459.662 kb on + strand, within MMP_RS02460 at 459.717 kb on + strand, within MMP_RS02460 at 459.727 kb on - strand, within MMP_RS02460 at 459.739 kb on - strand, within MMP_RS02460 at 459.739 kb on - strand, within MMP_RS02460 at 459.740 kb on + strand, within MMP_RS02460 at 459.740 kb on + strand, within MMP_RS02460 at 459.757 kb on - strand, within MMP_RS02460 at 459.769 kb on - strand, within MMP_RS02460 at 459.770 kb on + strand, within MMP_RS02460 at 459.770 kb on + strand, within MMP_RS02460 at 459.770 kb on + strand, within MMP_RS02460 at 459.833 kb on - strand, within MMP_RS02460 at 459.834 kb on + strand, within MMP_RS02460 at 459.843 kb on - strand, within MMP_RS02460 at 459.855 kb on - strand, within MMP_RS02460 at 459.855 kb on - strand, within MMP_RS02460 at 459.856 kb on + strand, within MMP_RS02460 at 459.856 kb on + strand, within MMP_RS02460 at 459.856 kb on + strand, within MMP_RS02460 at 459.858 kb on - strand, within MMP_RS02460 at 459.858 kb on - strand, within MMP_RS02460 at 459.859 kb on + strand, within MMP_RS02460 at 459.859 kb on + strand, within MMP_RS02460 at 459.860 kb on - strand, within MMP_RS02460 at 459.861 kb on + strand, within MMP_RS02460 at 459.861 kb on + strand, within MMP_RS02460 at 459.863 kb on - strand, within MMP_RS02460 at 459.864 kb on + strand, within MMP_RS02460 at 459.865 kb on - strand, within MMP_RS02460 at 459.865 kb on - strand, within MMP_RS02460 at 459.866 kb on + strand, within MMP_RS02460 at 459.866 kb on + strand, within MMP_RS02460 at 459.866 kb on + strand, within MMP_RS02460 at 459.878 kb on - strand, within MMP_RS02460 at 459.955 kb on + strand, within MMP_RS02460 at 459.980 kb on - strand, within MMP_RS02460 at 459.980 kb on - strand, within MMP_RS02460 at 459.981 kb on + strand, within MMP_RS02460 at 459.981 kb on + strand, within MMP_RS02460 at 459.984 kb on - strand, within MMP_RS02460 at 460.025 kb on - strand, within MMP_RS02460 at 460.083 kb on - strand, within MMP_RS02460 at 460.084 kb on + strand, within MMP_RS02460 at 460.084 kb on + strand, within MMP_RS02460 at 460.084 kb on + strand, within MMP_RS02460 at 460.121 kb on + strand, within MMP_RS02460
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 457,560 - MMP_RS02445 0.64 -1.2 457,561 + MMP_RS02445 0.64 +0.5 457,564 - MMP_RS02445 0.64 -0.9 457,564 - MMP_RS02445 0.64 -0.2 457,564 - MMP_RS02445 0.64 +1.0 457,564 - MMP_RS02445 0.64 +1.5 457,564 - MMP_RS02445 0.64 +0.9 457,565 + MMP_RS02445 0.64 +0.4 457,565 + MMP_RS02445 0.64 -1.0 457,566 - MMP_RS02445 0.64 +1.3 457,566 - MMP_RS02445 0.64 +0.1 457,566 - MMP_RS02445 0.64 +0.3 457,567 + MMP_RS02445 0.64 +1.1 457,567 + MMP_RS02445 0.64 +1.2 457,605 - MMP_RS02445 0.67 -2.3 457,606 + MMP_RS02445 0.67 -2.5 457,611 - MMP_RS02445 0.68 +1.2 457,611 - MMP_RS02445 0.68 +0.5 457,622 - MMP_RS02445 0.69 -1.2 457,675 + MMP_RS02445 0.72 +0.9 457,716 - MMP_RS02445 0.76 +2.2 457,879 + MMP_RS02445 0.88 -2.5 457,919 + -0.3 457,932 - -1.7 457,942 - -0.7 457,943 + -2.8 457,996 + +0.0 457,996 + -0.8 458,048 + +1.3 458,048 + -2.1 458,048 + -0.9 458,054 + -0.4 458,054 + +0.5 458,064 - -2.8 458,087 + -1.4 458,098 + -0.2 458,136 + -1.4 458,136 + +1.1 458,214 - +0.3 458,231 + -0.3 458,250 + +0.8 458,308 - +1.0 458,347 + MMP_RS02450 0.15 -2.4 458,361 - MMP_RS02450 0.22 -0.9 458,371 - MMP_RS02450 0.27 +1.3 458,392 - MMP_RS02450 0.38 -1.6 458,392 - MMP_RS02450 0.38 -0.5 458,398 + MMP_RS02450 0.41 +0.0 458,398 + MMP_RS02450 0.41 +1.0 458,403 + MMP_RS02450 0.44 -0.7 458,468 + MMP_RS02450 0.77 +0.6 458,532 + -1.0 458,628 - MMP_RS02455 0.17 -1.3 458,629 + MMP_RS02455 0.17 -1.9 458,630 - MMP_RS02455 0.17 -1.1 458,760 + MMP_RS02455 0.38 +0.6 458,783 - MMP_RS02455 0.42 -0.7 458,787 - MMP_RS02455 0.42 -2.5 458,787 - MMP_RS02455 0.42 -2.1 458,960 + MMP_RS02455 0.70 -3.6 458,963 - MMP_RS02455 0.71 -0.4 458,974 - MMP_RS02455 0.73 -1.2 458,974 - MMP_RS02455 0.73 +0.7 458,996 + MMP_RS02455 0.76 +1.3 459,136 - -2.6 459,212 + +1.3 459,241 - -2.5 459,255 - -0.6 459,288 - +0.5 459,307 + -4.7 459,321 - -1.2 459,344 - +0.3 459,345 + +0.8 459,378 + -1.1 459,409 - +0.5 459,409 - -1.0 459,409 - +1.0 459,410 + +1.8 459,411 - +1.3 459,446 + +2.6 459,448 - +0.6 459,448 - -0.7 459,448 - -1.9 459,449 + +0.2 459,451 - -0.7 459,452 + +1.1 459,452 + +0.9 459,452 + +1.6 459,452 + +1.0 459,453 - +2.0 459,453 - +1.2 459,454 + +1.5 459,457 - -0.6 459,457 - +0.7 459,457 - -0.4 459,458 + -2.3 459,482 - -2.1 459,482 - +0.0 459,482 - -1.1 459,502 - +0.7 459,502 - +1.0 459,515 - -0.3 459,519 - -2.0 459,520 + -0.1 459,520 + -0.8 459,520 + +1.6 459,520 + +1.7 459,520 + +0.8 459,520 + +2.4 459,546 - -0.3 459,546 - +0.1 459,547 + -0.6 459,550 - +1.5 459,596 - +0.2 459,659 + MMP_RS02460 0.11 +1.3 459,662 + MMP_RS02460 0.12 +1.2 459,717 + MMP_RS02460 0.13 +0.5 459,727 - MMP_RS02460 0.14 +0.3 459,739 - MMP_RS02460 0.14 -0.7 459,739 - MMP_RS02460 0.14 -0.4 459,740 + MMP_RS02460 0.14 +1.6 459,740 + MMP_RS02460 0.14 -0.4 459,757 - MMP_RS02460 0.15 +1.0 459,769 - MMP_RS02460 0.15 -3.9 459,770 + MMP_RS02460 0.15 +0.5 459,770 + MMP_RS02460 0.15 -0.1 459,770 + MMP_RS02460 0.15 -0.4 459,833 - MMP_RS02460 0.17 -1.0 459,834 + MMP_RS02460 0.17 +0.5 459,843 - MMP_RS02460 0.17 -0.3 459,855 - MMP_RS02460 0.18 +0.2 459,855 - MMP_RS02460 0.18 +1.7 459,856 + MMP_RS02460 0.18 -1.1 459,856 + MMP_RS02460 0.18 +0.5 459,856 + MMP_RS02460 0.18 +2.1 459,858 - MMP_RS02460 0.18 +1.4 459,858 - MMP_RS02460 0.18 +0.8 459,859 + MMP_RS02460 0.18 -0.5 459,859 + MMP_RS02460 0.18 +0.7 459,860 - MMP_RS02460 0.18 -0.4 459,861 + MMP_RS02460 0.18 +0.3 459,861 + MMP_RS02460 0.18 +1.9 459,863 - MMP_RS02460 0.18 +0.7 459,864 + MMP_RS02460 0.18 +0.5 459,865 - MMP_RS02460 0.18 +0.6 459,865 - MMP_RS02460 0.18 -0.8 459,866 + MMP_RS02460 0.18 -1.1 459,866 + MMP_RS02460 0.18 -1.0 459,866 + MMP_RS02460 0.18 +0.2 459,878 - MMP_RS02460 0.19 +1.4 459,955 + MMP_RS02460 0.21 +0.4 459,980 - MMP_RS02460 0.22 +0.1 459,980 - MMP_RS02460 0.22 -1.3 459,981 + MMP_RS02460 0.22 +1.6 459,981 + MMP_RS02460 0.22 +1.0 459,984 - MMP_RS02460 0.22 -1.0 460,025 - MMP_RS02460 0.23 -0.0 460,083 - MMP_RS02460 0.25 +1.5 460,084 + MMP_RS02460 0.25 -0.2 460,084 + MMP_RS02460 0.25 -2.1 460,084 + MMP_RS02460 0.25 +1.8 460,121 + MMP_RS02460 0.27 -3.5
Or see this region's nucleotide sequence