Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02430 and MMP_RS02435 are separated by 71 nucleotides MMP_RS02435 and MMP_RS02440 are separated by 345 nucleotides
MMP_RS02430: MMP_RS02430 - hypothetical protein, at 452,313 to 453,959
_RS02430
MMP_RS02435: MMP_RS02435 - tRNA-Ser, at 454,031 to 454,115
_RS02435
MMP_RS02440: MMP_RS02440 - hypothetical protein, at 454,461 to 454,838
_RS02440
Position (kb) 454
455 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 453.079 kb on + strand, within MMP_RS02430 at 453.313 kb on + strand, within MMP_RS02430 at 453.313 kb on + strand, within MMP_RS02430 at 453.451 kb on - strand, within MMP_RS02430 at 453.452 kb on + strand, within MMP_RS02430 at 453.459 kb on + strand, within MMP_RS02430 at 453.459 kb on + strand, within MMP_RS02430 at 453.463 kb on - strand, within MMP_RS02430 at 453.633 kb on + strand, within MMP_RS02430 at 453.670 kb on - strand, within MMP_RS02430 at 453.671 kb on + strand, within MMP_RS02430 at 453.676 kb on - strand, within MMP_RS02430 at 453.677 kb on + strand, within MMP_RS02430 at 453.693 kb on - strand, within MMP_RS02430 at 453.693 kb on - strand, within MMP_RS02430 at 453.722 kb on - strand, within MMP_RS02430 at 453.734 kb on - strand, within MMP_RS02430 at 453.735 kb on + strand, within MMP_RS02430 at 453.745 kb on - strand, within MMP_RS02430 at 453.858 kb on + strand at 453.928 kb on - strand at 453.928 kb on - strand at 453.928 kb on - strand at 453.931 kb on - strand at 453.965 kb on + strand at 453.970 kb on - strand at 453.971 kb on + strand at 454.170 kb on - strand at 454.185 kb on - strand at 454.196 kb on - strand at 454.312 kb on + strand at 454.312 kb on + strand at 454.314 kb on - strand at 454.315 kb on + strand at 454.504 kb on + strand, within MMP_RS02440 at 454.506 kb on + strand, within MMP_RS02440 at 454.506 kb on + strand, within MMP_RS02440 at 454.515 kb on - strand, within MMP_RS02440 at 454.516 kb on + strand, within MMP_RS02440 at 454.573 kb on + strand, within MMP_RS02440 at 454.624 kb on - strand, within MMP_RS02440 at 454.624 kb on - strand, within MMP_RS02440 at 454.841 kb on + strand at 454.862 kb on - strand at 454.944 kb on - strand at 454.944 kb on - strand at 454.969 kb on + strand at 454.988 kb on + strand at 454.989 kb on - strand at 455.021 kb on + strand at 455.039 kb on + strand at 455.039 kb on + strand at 455.060 kb on - strand at 455.061 kb on + strand at 455.061 kb on + strand at 455.099 kb on + strand at 455.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 453,079 + MMP_RS02430 0.47 -0.7 453,313 + MMP_RS02430 0.61 -2.0 453,313 + MMP_RS02430 0.61 +0.2 453,451 - MMP_RS02430 0.69 -2.4 453,452 + MMP_RS02430 0.69 -1.0 453,459 + MMP_RS02430 0.70 -0.2 453,459 + MMP_RS02430 0.70 +1.0 453,463 - MMP_RS02430 0.70 +0.8 453,633 + MMP_RS02430 0.80 +1.7 453,670 - MMP_RS02430 0.82 +0.3 453,671 + MMP_RS02430 0.82 +0.8 453,676 - MMP_RS02430 0.83 -1.1 453,677 + MMP_RS02430 0.83 +0.1 453,693 - MMP_RS02430 0.84 +1.0 453,693 - MMP_RS02430 0.84 +0.9 453,722 - MMP_RS02430 0.86 -0.8 453,734 - MMP_RS02430 0.86 -1.1 453,735 + MMP_RS02430 0.86 +0.5 453,745 - MMP_RS02430 0.87 -0.6 453,858 + +0.5 453,928 - +0.9 453,928 - +0.9 453,928 - +1.3 453,931 - +0.5 453,965 + -2.2 453,970 - +0.6 453,971 + -0.2 454,170 - +1.2 454,185 - -4.6 454,196 - -5.6 454,312 + -0.4 454,312 + +1.4 454,314 - -3.1 454,315 + +1.4 454,504 + MMP_RS02440 0.11 +1.5 454,506 + MMP_RS02440 0.12 -0.2 454,506 + MMP_RS02440 0.12 +0.6 454,515 - MMP_RS02440 0.14 +0.3 454,516 + MMP_RS02440 0.15 -0.4 454,573 + MMP_RS02440 0.30 +1.0 454,624 - MMP_RS02440 0.43 +0.3 454,624 - MMP_RS02440 0.43 +0.3 454,841 + +0.1 454,862 - +1.6 454,944 - +1.2 454,944 - +0.1 454,969 + -3.5 454,988 + -0.6 454,989 - -0.3 455,021 + -0.6 455,039 + +0.2 455,039 + -3.8 455,060 - +1.6 455,061 + -0.9 455,061 + +0.4 455,099 + +0.0 455,109 - +0.4
Or see this region's nucleotide sequence