Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01940 and MMP_RS01945 overlap by 26 nucleotides MMP_RS01945 and MMP_RS01950 overlap by 1 nucleotides MMP_RS01950 and MMP_RS01955 are separated by 188 nucleotides MMP_RS01955 and MMP_RS01960 are separated by 12 nucleotides
MMP_RS01940: MMP_RS01940 - MoxR family ATPase, at 359,558 to 360,499
_RS01940
MMP_RS01945: MMP_RS01945 - DUF4350 domain-containing protein, at 360,474 to 361,472
_RS01945
MMP_RS01950: MMP_RS01950 - hypothetical protein, at 361,472 to 363,307
_RS01950
MMP_RS01955: MMP_RS01955 - hypothetical protein, at 363,496 to 364,086
_RS01955
MMP_RS01960: MMP_RS01960 - hypothetical protein, at 364,099 to 364,338
_RS01960
Position (kb) 361
362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 360.480 kb on + strand at 360.513 kb on - strand at 360.514 kb on + strand at 360.518 kb on - strand at 360.612 kb on + strand, within MMP_RS01945 at 360.649 kb on + strand, within MMP_RS01945 at 360.743 kb on - strand, within MMP_RS01945 at 360.884 kb on - strand, within MMP_RS01945 at 360.885 kb on + strand, within MMP_RS01945 at 360.901 kb on - strand, within MMP_RS01945 at 360.906 kb on - strand, within MMP_RS01945 at 360.907 kb on + strand, within MMP_RS01945 at 360.992 kb on + strand, within MMP_RS01945 at 360.995 kb on - strand, within MMP_RS01945 at 360.996 kb on + strand, within MMP_RS01945 at 361.013 kb on - strand, within MMP_RS01945 at 361.015 kb on - strand, within MMP_RS01945 at 361.045 kb on - strand, within MMP_RS01945 at 361.274 kb on + strand, within MMP_RS01945 at 361.282 kb on - strand, within MMP_RS01945 at 361.291 kb on - strand, within MMP_RS01945 at 361.292 kb on + strand, within MMP_RS01945 at 361.294 kb on + strand, within MMP_RS01945 at 361.294 kb on + strand, within MMP_RS01945 at 361.548 kb on - strand at 361.595 kb on - strand at 361.601 kb on + strand at 361.683 kb on - strand, within MMP_RS01950 at 361.749 kb on + strand, within MMP_RS01950 at 361.798 kb on - strand, within MMP_RS01950 at 361.803 kb on + strand, within MMP_RS01950 at 361.803 kb on + strand, within MMP_RS01950 at 361.804 kb on - strand, within MMP_RS01950 at 361.812 kb on + strand, within MMP_RS01950 at 361.813 kb on - strand, within MMP_RS01950 at 361.813 kb on - strand, within MMP_RS01950 at 361.825 kb on - strand, within MMP_RS01950 at 361.841 kb on - strand, within MMP_RS01950 at 361.842 kb on + strand, within MMP_RS01950 at 361.842 kb on + strand, within MMP_RS01950 at 361.874 kb on + strand, within MMP_RS01950 at 361.888 kb on - strand, within MMP_RS01950 at 361.888 kb on - strand, within MMP_RS01950 at 361.889 kb on + strand, within MMP_RS01950 at 361.889 kb on + strand, within MMP_RS01950 at 361.891 kb on + strand, within MMP_RS01950 at 361.891 kb on + strand, within MMP_RS01950 at 361.940 kb on - strand, within MMP_RS01950 at 361.946 kb on - strand, within MMP_RS01950 at 361.971 kb on - strand, within MMP_RS01950 at 361.972 kb on + strand, within MMP_RS01950 at 361.972 kb on + strand, within MMP_RS01950 at 361.975 kb on + strand, within MMP_RS01950 at 362.030 kb on - strand, within MMP_RS01950 at 362.299 kb on - strand, within MMP_RS01950 at 362.299 kb on - strand, within MMP_RS01950 at 362.299 kb on - strand, within MMP_RS01950 at 362.299 kb on - strand, within MMP_RS01950 at 362.301 kb on - strand, within MMP_RS01950 at 362.408 kb on + strand, within MMP_RS01950 at 362.437 kb on + strand, within MMP_RS01950 at 362.474 kb on + strand, within MMP_RS01950 at 362.477 kb on - strand, within MMP_RS01950 at 363.101 kb on + strand, within MMP_RS01950 at 363.114 kb on - strand, within MMP_RS01950 at 363.115 kb on + strand, within MMP_RS01950 at 363.115 kb on + strand, within MMP_RS01950 at 363.122 kb on + strand, within MMP_RS01950 at 363.125 kb on + strand at 363.263 kb on - strand at 363.269 kb on + strand at 363.272 kb on - strand at 363.272 kb on - strand at 363.273 kb on + strand at 363.273 kb on + strand at 363.282 kb on + strand at 363.284 kb on - strand at 363.380 kb on - strand at 363.394 kb on + strand at 363.404 kb on + strand at 363.415 kb on + strand at 363.423 kb on - strand at 363.423 kb on - strand at 363.423 kb on - strand at 363.423 kb on - strand at 363.424 kb on + strand at 363.426 kb on + strand at 363.592 kb on - strand, within MMP_RS01955 at 363.593 kb on + strand, within MMP_RS01955 at 363.593 kb on + strand, within MMP_RS01955 at 363.827 kb on - strand, within MMP_RS01955 at 363.830 kb on - strand, within MMP_RS01955 at 364.269 kb on - strand, within MMP_RS01960 at 364.276 kb on - strand, within MMP_RS01960
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 360,480 + +1.3 360,513 - +0.9 360,514 + +0.6 360,518 - +2.2 360,612 + MMP_RS01945 0.14 +2.3 360,649 + MMP_RS01945 0.18 -0.6 360,743 - MMP_RS01945 0.27 -0.8 360,884 - MMP_RS01945 0.41 +1.7 360,885 + MMP_RS01945 0.41 -3.2 360,901 - MMP_RS01945 0.43 +0.7 360,906 - MMP_RS01945 0.43 +0.6 360,907 + MMP_RS01945 0.43 -0.7 360,992 + MMP_RS01945 0.52 +0.6 360,995 - MMP_RS01945 0.52 -1.5 360,996 + MMP_RS01945 0.52 +0.3 361,013 - MMP_RS01945 0.54 -2.0 361,015 - MMP_RS01945 0.54 -0.6 361,045 - MMP_RS01945 0.57 -0.5 361,274 + MMP_RS01945 0.80 +1.0 361,282 - MMP_RS01945 0.81 +1.5 361,291 - MMP_RS01945 0.82 +1.9 361,292 + MMP_RS01945 0.82 +0.6 361,294 + MMP_RS01945 0.82 +1.6 361,294 + MMP_RS01945 0.82 +0.2 361,548 - -1.0 361,595 - -2.4 361,601 + +1.2 361,683 - MMP_RS01950 0.11 +0.5 361,749 + MMP_RS01950 0.15 -3.3 361,798 - MMP_RS01950 0.18 -1.1 361,803 + MMP_RS01950 0.18 +2.3 361,803 + MMP_RS01950 0.18 +0.5 361,804 - MMP_RS01950 0.18 +1.0 361,812 + MMP_RS01950 0.19 +0.7 361,813 - MMP_RS01950 0.19 -0.9 361,813 - MMP_RS01950 0.19 +0.2 361,825 - MMP_RS01950 0.19 +2.5 361,841 - MMP_RS01950 0.20 +0.0 361,842 + MMP_RS01950 0.20 -1.9 361,842 + MMP_RS01950 0.20 -2.0 361,874 + MMP_RS01950 0.22 +1.4 361,888 - MMP_RS01950 0.23 -0.6 361,888 - MMP_RS01950 0.23 +1.5 361,889 + MMP_RS01950 0.23 -1.4 361,889 + MMP_RS01950 0.23 +1.6 361,891 + MMP_RS01950 0.23 +1.9 361,891 + MMP_RS01950 0.23 +1.4 361,940 - MMP_RS01950 0.25 +0.9 361,946 - MMP_RS01950 0.26 -0.5 361,971 - MMP_RS01950 0.27 -1.8 361,972 + MMP_RS01950 0.27 +1.2 361,972 + MMP_RS01950 0.27 +2.2 361,975 + MMP_RS01950 0.27 -0.8 362,030 - MMP_RS01950 0.30 +0.3 362,299 - MMP_RS01950 0.45 +0.3 362,299 - MMP_RS01950 0.45 +0.3 362,299 - MMP_RS01950 0.45 +2.9 362,299 - MMP_RS01950 0.45 +1.6 362,301 - MMP_RS01950 0.45 +0.9 362,408 + MMP_RS01950 0.51 -3.5 362,437 + MMP_RS01950 0.53 +0.8 362,474 + MMP_RS01950 0.55 +1.7 362,477 - MMP_RS01950 0.55 -3.2 363,101 + MMP_RS01950 0.89 +1.5 363,114 - MMP_RS01950 0.89 +2.2 363,115 + MMP_RS01950 0.89 +0.6 363,115 + MMP_RS01950 0.89 -1.1 363,122 + MMP_RS01950 0.90 +0.5 363,125 + +1.1 363,263 - -0.3 363,269 + -0.9 363,272 - +0.8 363,272 - -0.7 363,273 + +1.2 363,273 + +0.6 363,282 + -0.5 363,284 - +0.0 363,380 - +0.6 363,394 + +0.5 363,404 + +1.4 363,415 + -0.9 363,423 - +2.3 363,423 - +0.6 363,423 - -0.4 363,423 - -2.7 363,424 + +1.1 363,426 + +0.6 363,592 - MMP_RS01955 0.16 -0.3 363,593 + MMP_RS01955 0.16 +0.9 363,593 + MMP_RS01955 0.16 -0.5 363,827 - MMP_RS01955 0.56 -0.7 363,830 - MMP_RS01955 0.57 +0.2 364,269 - MMP_RS01960 0.71 +0.5 364,276 - MMP_RS01960 0.74 +0.8
Or see this region's nucleotide sequence