Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01770

Experiment: Formate McCas no stress control 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS01760 and MMP_RS01765 are separated by 1 nucleotidesMMP_RS01765 and MMP_RS01770 are separated by 154 nucleotidesMMP_RS01770 and MMP_RS01775 are separated by 341 nucleotides MMP_RS01760: MMP_RS01760 - cobalt-precorrin-8 methylmutase, at 327,278 to 327,910 _RS01760 MMP_RS01765: MMP_RS01765 - HIT family protein, at 327,912 to 328,304 _RS01765 MMP_RS01770: MMP_RS01770 - ATP-dependent endonuclease, at 328,459 to 330,339 _RS01770 MMP_RS01775: MMP_RS01775 - TIGR00297 family protein, at 330,681 to 331,394 _RS01775 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 328.188 kb on - strand, within MMP_RS01765at 328.189 kb on + strand, within MMP_RS01765at 328.191 kb on - strand, within MMP_RS01765at 328.196 kb on - strand, within MMP_RS01765at 328.197 kb on + strand, within MMP_RS01765at 328.226 kb on - strand, within MMP_RS01765at 328.257 kb on - strand, within MMP_RS01765at 328.308 kb on - strandat 328.318 kb on - strandat 328.319 kb on + strandat 328.319 kb on + strandat 328.319 kb on + strandat 328.354 kb on - strandat 328.354 kb on - strandat 328.354 kb on - strandat 328.355 kb on + strandat 328.356 kb on - strandat 328.358 kb on - strandat 328.359 kb on + strandat 328.359 kb on + strandat 328.416 kb on - strandat 328.475 kb on - strandat 328.479 kb on - strandat 328.479 kb on - strandat 328.563 kb on - strandat 328.576 kb on + strandat 328.577 kb on - strandat 328.957 kb on + strand, within MMP_RS01770at 329.166 kb on - strand, within MMP_RS01770at 329.167 kb on + strand, within MMP_RS01770at 329.270 kb on - strand, within MMP_RS01770at 329.289 kb on - strand, within MMP_RS01770at 329.303 kb on - strand, within MMP_RS01770at 329.304 kb on + strand, within MMP_RS01770at 329.308 kb on - strand, within MMP_RS01770at 329.309 kb on + strand, within MMP_RS01770at 329.339 kb on + strand, within MMP_RS01770at 329.355 kb on + strand, within MMP_RS01770at 329.357 kb on + strand, within MMP_RS01770at 329.501 kb on + strand, within MMP_RS01770at 329.505 kb on + strand, within MMP_RS01770at 329.551 kb on + strand, within MMP_RS01770at 329.576 kb on - strand, within MMP_RS01770at 329.581 kb on + strand, within MMP_RS01770at 329.581 kb on + strand, within MMP_RS01770at 329.863 kb on + strand, within MMP_RS01770at 329.866 kb on - strand, within MMP_RS01770at 329.867 kb on + strand, within MMP_RS01770at 329.915 kb on + strand, within MMP_RS01770at 329.915 kb on + strand, within MMP_RS01770at 329.915 kb on + strand, within MMP_RS01770at 329.931 kb on - strand, within MMP_RS01770at 329.946 kb on - strand, within MMP_RS01770at 329.946 kb on - strand, within MMP_RS01770at 329.950 kb on - strand, within MMP_RS01770at 329.951 kb on + strand, within MMP_RS01770at 329.952 kb on - strand, within MMP_RS01770at 329.952 kb on - strand, within MMP_RS01770at 329.952 kb on - strand, within MMP_RS01770at 329.953 kb on + strand, within MMP_RS01770at 329.953 kb on + strand, within MMP_RS01770at 330.035 kb on - strand, within MMP_RS01770at 330.036 kb on + strand, within MMP_RS01770at 330.119 kb on - strand, within MMP_RS01770at 330.120 kb on + strand, within MMP_RS01770at 330.154 kb on - strandat 330.154 kb on - strandat 330.158 kb on - strandat 330.158 kb on - strandat 330.159 kb on + strandat 330.162 kb on + strandat 330.199 kb on - strandat 330.200 kb on + strandat 330.204 kb on - strandat 330.245 kb on - strandat 330.246 kb on + strandat 330.246 kb on + strandat 330.271 kb on - strandat 330.272 kb on + strandat 330.279 kb on - strandat 330.300 kb on + strandat 330.337 kb on - strandat 330.477 kb on - strandat 330.493 kb on + strandat 330.496 kb on - strandat 330.506 kb on - strandat 330.527 kb on - strandat 330.538 kb on - strandat 330.598 kb on + strandat 330.599 kb on - strandat 330.603 kb on + strandat 330.604 kb on - strandat 330.604 kb on - strandat 330.628 kb on + strandat 330.756 kb on - strand, within MMP_RS01775at 330.967 kb on - strand, within MMP_RS01775

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
remove
328,188 - MMP_RS01765 0.70 +0.3
328,189 + MMP_RS01765 0.70 -1.9
328,191 - MMP_RS01765 0.71 -2.0
328,196 - MMP_RS01765 0.72 +1.2
328,197 + MMP_RS01765 0.73 +1.4
328,226 - MMP_RS01765 0.80 -0.5
328,257 - MMP_RS01765 0.88 -0.8
328,308 - +0.8
328,318 - -0.5
328,319 + +0.3
328,319 + -1.7
328,319 + -0.3
328,354 - -1.7
328,354 - +0.6
328,354 - +0.0
328,355 + -1.2
328,356 - -1.4
328,358 - -1.2
328,359 + +0.9
328,359 + -1.0
328,416 - +0.4
328,475 - +0.8
328,479 - +0.4
328,479 - +0.5
328,563 - +1.2
328,576 + -2.6
328,577 - -4.3
328,957 + MMP_RS01770 0.26 -2.0
329,166 - MMP_RS01770 0.38 -0.6
329,167 + MMP_RS01770 0.38 -3.2
329,270 - MMP_RS01770 0.43 -0.4
329,289 - MMP_RS01770 0.44 -2.7
329,303 - MMP_RS01770 0.45 +1.1
329,304 + MMP_RS01770 0.45 -1.7
329,308 - MMP_RS01770 0.45 +1.2
329,309 + MMP_RS01770 0.45 -0.0
329,339 + MMP_RS01770 0.47 -1.9
329,355 + MMP_RS01770 0.48 -0.7
329,357 + MMP_RS01770 0.48 +0.1
329,501 + MMP_RS01770 0.55 -0.9
329,505 + MMP_RS01770 0.56 +0.6
329,551 + MMP_RS01770 0.58 -0.1
329,576 - MMP_RS01770 0.59 +1.0
329,581 + MMP_RS01770 0.60 -1.3
329,581 + MMP_RS01770 0.60 -2.6
329,863 + MMP_RS01770 0.75 -1.3
329,866 - MMP_RS01770 0.75 -2.1
329,867 + MMP_RS01770 0.75 -2.5
329,915 + MMP_RS01770 0.77 -3.9
329,915 + MMP_RS01770 0.77 -0.9
329,915 + MMP_RS01770 0.77 +0.7
329,931 - MMP_RS01770 0.78 -0.9
329,946 - MMP_RS01770 0.79 -1.1
329,946 - MMP_RS01770 0.79 +0.6
329,950 - MMP_RS01770 0.79 +0.7
329,951 + MMP_RS01770 0.79 -4.3
329,952 - MMP_RS01770 0.79 +1.4
329,952 - MMP_RS01770 0.79 +1.0
329,952 - MMP_RS01770 0.79 +0.4
329,953 + MMP_RS01770 0.79 -3.1
329,953 + MMP_RS01770 0.79 -0.8
330,035 - MMP_RS01770 0.84 -2.8
330,036 + MMP_RS01770 0.84 -1.4
330,119 - MMP_RS01770 0.88 +0.1
330,120 + MMP_RS01770 0.88 -1.6
330,154 - -1.0
330,154 - +0.0
330,158 - -1.3
330,158 - -0.4
330,159 + +0.3
330,162 + -0.8
330,199 - -2.3
330,200 + -2.2
330,204 - -3.8
330,245 - +2.0
330,246 + -3.6
330,246 + -0.2
330,271 - -2.6
330,272 + -2.2
330,279 - -0.3
330,300 + -0.6
330,337 - +1.5
330,477 - +0.3
330,493 + -0.8
330,496 - -2.1
330,506 - +1.0
330,527 - -1.8
330,538 - -1.0
330,598 + -0.3
330,599 - -0.2
330,603 + -0.2
330,604 - -0.0
330,604 - -0.6
330,628 + -1.1
330,756 - MMP_RS01775 0.11 +0.3
330,967 - MMP_RS01775 0.40 +0.9

Or see this region's nucleotide sequence