Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01680 and MMP_RS01685 overlap by 8 nucleotides MMP_RS01685 and MMP_RS01690 overlap by 4 nucleotides
MMP_RS01680: MMP_RS01680 - phenylacetate--CoA ligase, at 308,925 to 310,169
_RS01680
MMP_RS01685: MMP_RS01685 - indolepyruvate oxidoreductase subunit beta, at 310,162 to 310,761
_RS01685
MMP_RS01690: MMP_RS01690 - indolepyruvate ferredoxin oxidoreductase subunit alpha, at 310,758 to 312,596
_RS01690
Position (kb) 310
311 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 309.276 kb on + strand, within MMP_RS01680 at 309.344 kb on - strand, within MMP_RS01680 at 309.489 kb on - strand, within MMP_RS01680 at 309.489 kb on - strand, within MMP_RS01680 at 309.489 kb on - strand, within MMP_RS01680 at 309.490 kb on + strand, within MMP_RS01680 at 309.509 kb on - strand, within MMP_RS01680 at 309.821 kb on - strand, within MMP_RS01680 at 309.828 kb on + strand, within MMP_RS01680 at 309.879 kb on + strand, within MMP_RS01680 at 309.882 kb on - strand, within MMP_RS01680 at 309.883 kb on + strand, within MMP_RS01680 at 309.898 kb on - strand, within MMP_RS01680 at 309.903 kb on - strand, within MMP_RS01680 at 309.943 kb on + strand, within MMP_RS01680 at 310.049 kb on - strand at 310.050 kb on + strand at 310.065 kb on - strand at 310.065 kb on - strand at 310.065 kb on - strand at 310.397 kb on - strand, within MMP_RS01685 at 310.486 kb on - strand, within MMP_RS01685 at 310.745 kb on + strand at 310.997 kb on + strand, within MMP_RS01690 at 311.111 kb on - strand, within MMP_RS01690 at 311.229 kb on - strand, within MMP_RS01690 at 311.427 kb on + strand, within MMP_RS01690 at 311.619 kb on - strand, within MMP_RS01690 at 311.620 kb on + strand, within MMP_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 309,276 + MMP_RS01680 0.28 +1.9 309,344 - MMP_RS01680 0.34 +0.6 309,489 - MMP_RS01680 0.45 -0.7 309,489 - MMP_RS01680 0.45 +0.7 309,489 - MMP_RS01680 0.45 -0.7 309,490 + MMP_RS01680 0.45 +0.7 309,509 - MMP_RS01680 0.47 +0.5 309,821 - MMP_RS01680 0.72 -1.1 309,828 + MMP_RS01680 0.73 -1.6 309,879 + MMP_RS01680 0.77 +1.2 309,882 - MMP_RS01680 0.77 -1.9 309,883 + MMP_RS01680 0.77 -0.8 309,898 - MMP_RS01680 0.78 -2.6 309,903 - MMP_RS01680 0.79 +0.7 309,943 + MMP_RS01680 0.82 -0.2 310,049 - +0.1 310,050 + -2.8 310,065 - +0.3 310,065 - +0.1 310,065 - +0.4 310,397 - MMP_RS01685 0.39 -1.0 310,486 - MMP_RS01685 0.54 -0.6 310,745 + +0.1 310,997 + MMP_RS01690 0.13 -0.6 311,111 - MMP_RS01690 0.19 +1.4 311,229 - MMP_RS01690 0.26 -0.2 311,427 + MMP_RS01690 0.36 -2.6 311,619 - MMP_RS01690 0.47 -2.1 311,620 + MMP_RS01690 0.47 +0.6
Or see this region's nucleotide sequence