Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01605 and MMP_RS01610 are separated by 259 nucleotides MMP_RS01610 and MMP_RS01615 overlap by 1 nucleotides MMP_RS01615 and MMP_RS01620 are separated by 198 nucleotides MMP_RS01620 and MMP_RS01625 are separated by 14 nucleotides
MMP_RS01605: MMP_RS01605 - hypothetical protein, at 299,545 to 299,793
_RS01605
MMP_RS01610: MMP_RS01610 - hypothetical protein, at 300,053 to 300,514
_RS01610
MMP_RS01615: MMP_RS01615 - hydrogenase maturation nickel metallochaperone HypA, at 300,514 to 300,894
_RS01615
MMP_RS01620: MMP_RS01620 - hypothetical protein, at 301,093 to 301,452
_RS01620
MMP_RS01625: MMP_RS01625 - rubredoxin, at 301,467 to 301,604
_RS01625
Position (kb) 300
301 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 299.061 kb on - strand at 299.061 kb on - strand at 299.061 kb on - strand at 299.185 kb on - strand at 299.186 kb on + strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.189 kb on + strand at 299.190 kb on - strand at 299.194 kb on - strand at 299.195 kb on + strand at 299.199 kb on - strand at 299.199 kb on - strand at 299.201 kb on - strand at 299.206 kb on + strand at 299.209 kb on - strand at 299.252 kb on - strand at 299.287 kb on - strand at 299.290 kb on - strand at 299.294 kb on - strand at 299.303 kb on + strand at 299.309 kb on + strand at 299.309 kb on + strand at 299.399 kb on + strand at 299.423 kb on - strand at 299.423 kb on - strand at 299.424 kb on + strand at 299.456 kb on + strand at 299.463 kb on - strand at 299.583 kb on + strand, within MMP_RS01605 at 299.604 kb on - strand, within MMP_RS01605 at 299.606 kb on - strand, within MMP_RS01605 at 299.607 kb on + strand, within MMP_RS01605 at 299.740 kb on + strand, within MMP_RS01605 at 299.758 kb on + strand, within MMP_RS01605 at 299.762 kb on + strand, within MMP_RS01605 at 299.847 kb on + strand at 299.921 kb on + strand at 299.932 kb on - strand at 299.985 kb on - strand at 299.985 kb on - strand at 299.998 kb on - strand at 300.007 kb on - strand at 300.035 kb on + strand at 300.058 kb on + strand at 300.058 kb on + strand at 300.061 kb on - strand at 300.178 kb on + strand, within MMP_RS01610 at 300.252 kb on - strand, within MMP_RS01610 at 300.256 kb on - strand, within MMP_RS01610 at 300.256 kb on - strand, within MMP_RS01610 at 300.351 kb on - strand, within MMP_RS01610 at 300.496 kb on - strand at 300.596 kb on - strand at 300.615 kb on + strand at 300.645 kb on + strand at 300.829 kb on + strand at 300.852 kb on - strand at 300.857 kb on - strand at 300.860 kb on - strand at 300.861 kb on + strand at 300.909 kb on - strand at 300.909 kb on - strand at 300.936 kb on - strand at 300.938 kb on - strand at 300.938 kb on - strand at 300.939 kb on + strand at 300.941 kb on + strand at 300.941 kb on + strand at 300.943 kb on - strand at 300.950 kb on - strand at 300.950 kb on - strand at 301.035 kb on - strand at 301.036 kb on + strand at 301.037 kb on - strand at 301.038 kb on + strand at 301.190 kb on - strand, within MMP_RS01620 at 301.191 kb on + strand, within MMP_RS01620 at 301.264 kb on + strand, within MMP_RS01620 at 301.350 kb on - strand, within MMP_RS01620 at 301.350 kb on - strand, within MMP_RS01620 at 301.417 kb on - strand at 301.432 kb on + strand at 301.441 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 299,061 - -1.8 299,061 - +1.5 299,061 - +0.6 299,185 - -0.3 299,186 + -0.8 299,188 - +0.6 299,188 - +0.6 299,188 - -0.3 299,188 - -0.7 299,189 + +0.7 299,190 - +1.7 299,194 - +0.0 299,195 + +1.0 299,199 - +0.4 299,199 - +0.3 299,201 - -2.2 299,206 + -0.9 299,209 - +1.0 299,252 - -2.3 299,287 - +0.3 299,290 - +0.7 299,294 - +0.9 299,303 + +2.0 299,309 + +0.8 299,309 + +1.9 299,399 + -1.2 299,423 - -3.7 299,423 - +0.6 299,424 + +1.5 299,456 + +0.0 299,463 - -1.1 299,583 + MMP_RS01605 0.15 -4.3 299,604 - MMP_RS01605 0.24 +0.0 299,606 - MMP_RS01605 0.24 +0.3 299,607 + MMP_RS01605 0.25 +1.1 299,740 + MMP_RS01605 0.78 -4.3 299,758 + MMP_RS01605 0.86 -2.3 299,762 + MMP_RS01605 0.87 -0.3 299,847 + +1.0 299,921 + +1.3 299,932 - +0.4 299,985 - +0.3 299,985 - -1.2 299,998 - +0.4 300,007 - +0.7 300,035 + -3.2 300,058 + -0.9 300,058 + -2.6 300,061 - -1.2 300,178 + MMP_RS01610 0.27 +0.3 300,252 - MMP_RS01610 0.43 -2.4 300,256 - MMP_RS01610 0.44 -1.3 300,256 - MMP_RS01610 0.44 -2.3 300,351 - MMP_RS01610 0.65 -1.8 300,496 - +0.5 300,596 - +0.0 300,615 + +0.5 300,645 + -1.7 300,829 + +1.6 300,852 - -3.0 300,857 - +0.1 300,860 - -1.0 300,861 + -2.4 300,909 - -4.4 300,909 - -1.0 300,936 - +0.5 300,938 - -0.3 300,938 - -0.9 300,939 + -1.1 300,941 + -0.1 300,941 + -4.7 300,943 - +0.8 300,950 - -1.0 300,950 - -1.8 301,035 - -0.2 301,036 + -1.7 301,037 - +2.3 301,038 + +0.3 301,190 - MMP_RS01620 0.27 +0.2 301,191 + MMP_RS01620 0.27 -0.9 301,264 + MMP_RS01620 0.47 +0.4 301,350 - MMP_RS01620 0.71 +1.3 301,350 - MMP_RS01620 0.71 -2.1 301,417 - +1.0 301,432 + -0.6 301,441 + -0.5
Or see this region's nucleotide sequence