Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01600 and MMP_RS01605 are separated by 975 nucleotides MMP_RS01605 and MMP_RS01610 are separated by 259 nucleotides MMP_RS01610 and MMP_RS01615 overlap by 1 nucleotides
MMP_RS01600: MMP_RS01600 - 50S ribosomal protein L15e, at 297,985 to 298,569
_RS01600
MMP_RS01605: MMP_RS01605 - hypothetical protein, at 299,545 to 299,793
_RS01605
MMP_RS01610: MMP_RS01610 - hypothetical protein, at 300,053 to 300,514
_RS01610
MMP_RS01615: MMP_RS01615 - hydrogenase maturation nickel metallochaperone HypA, at 300,514 to 300,894
_RS01615
Position (kb)
299
300 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 298.616 kb on - strand at 298.656 kb on - strand at 298.660 kb on - strand at 298.661 kb on + strand at 298.668 kb on - strand at 298.679 kb on - strand at 298.855 kb on - strand at 298.921 kb on - strand at 298.928 kb on - strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.938 kb on + strand at 298.982 kb on + strand at 299.024 kb on - strand at 299.061 kb on - strand at 299.061 kb on - strand at 299.061 kb on - strand at 299.185 kb on - strand at 299.186 kb on + strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.188 kb on - strand at 299.189 kb on + strand at 299.190 kb on - strand at 299.194 kb on - strand at 299.195 kb on + strand at 299.199 kb on - strand at 299.199 kb on - strand at 299.201 kb on - strand at 299.206 kb on + strand at 299.209 kb on - strand at 299.252 kb on - strand at 299.287 kb on - strand at 299.290 kb on - strand at 299.294 kb on - strand at 299.303 kb on + strand at 299.309 kb on + strand at 299.309 kb on + strand at 299.399 kb on + strand at 299.423 kb on - strand at 299.423 kb on - strand at 299.424 kb on + strand at 299.456 kb on + strand at 299.463 kb on - strand at 299.583 kb on + strand, within MMP_RS01605 at 299.604 kb on - strand, within MMP_RS01605 at 299.606 kb on - strand, within MMP_RS01605 at 299.607 kb on + strand, within MMP_RS01605 at 299.740 kb on + strand, within MMP_RS01605 at 299.758 kb on + strand, within MMP_RS01605 at 299.762 kb on + strand, within MMP_RS01605 at 299.847 kb on + strand at 299.921 kb on + strand at 299.932 kb on - strand at 299.985 kb on - strand at 299.985 kb on - strand at 299.998 kb on - strand at 300.007 kb on - strand at 300.035 kb on + strand at 300.058 kb on + strand at 300.058 kb on + strand at 300.061 kb on - strand at 300.178 kb on + strand, within MMP_RS01610 at 300.252 kb on - strand, within MMP_RS01610 at 300.256 kb on - strand, within MMP_RS01610 at 300.256 kb on - strand, within MMP_RS01610 at 300.351 kb on - strand, within MMP_RS01610 at 300.496 kb on - strand at 300.596 kb on - strand at 300.615 kb on + strand at 300.645 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 298,616 - +1.1 298,656 - +0.5 298,660 - +1.0 298,661 + -0.0 298,668 - -0.0 298,679 - -0.3 298,855 - +0.4 298,921 - +0.2 298,928 - -4.0 298,938 + -0.9 298,938 + +1.1 298,938 + -0.7 298,938 + -1.3 298,982 + +2.0 299,024 - +0.5 299,061 - -1.8 299,061 - +1.5 299,061 - +0.6 299,185 - -0.3 299,186 + -0.8 299,188 - +0.6 299,188 - +0.6 299,188 - -0.3 299,188 - -0.7 299,189 + +0.7 299,190 - +1.7 299,194 - +0.0 299,195 + +1.0 299,199 - +0.4 299,199 - +0.3 299,201 - -2.2 299,206 + -0.9 299,209 - +1.0 299,252 - -2.3 299,287 - +0.3 299,290 - +0.7 299,294 - +0.9 299,303 + +2.0 299,309 + +0.8 299,309 + +1.9 299,399 + -1.2 299,423 - -3.7 299,423 - +0.6 299,424 + +1.5 299,456 + +0.0 299,463 - -1.1 299,583 + MMP_RS01605 0.15 -4.3 299,604 - MMP_RS01605 0.24 +0.0 299,606 - MMP_RS01605 0.24 +0.3 299,607 + MMP_RS01605 0.25 +1.1 299,740 + MMP_RS01605 0.78 -4.3 299,758 + MMP_RS01605 0.86 -2.3 299,762 + MMP_RS01605 0.87 -0.3 299,847 + +1.0 299,921 + +1.3 299,932 - +0.4 299,985 - +0.3 299,985 - -1.2 299,998 - +0.4 300,007 - +0.7 300,035 + -3.2 300,058 + -0.9 300,058 + -2.6 300,061 - -1.2 300,178 + MMP_RS01610 0.27 +0.3 300,252 - MMP_RS01610 0.43 -2.4 300,256 - MMP_RS01610 0.44 -1.3 300,256 - MMP_RS01610 0.44 -2.3 300,351 - MMP_RS01610 0.65 -1.8 300,496 - +0.5 300,596 - +0.0 300,615 + +0.5 300,645 + -1.7
Or see this region's nucleotide sequence