Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01355 and MMP_RS01360 are separated by 29 nucleotides MMP_RS01360 and MMP_RS01365 are separated by 98 nucleotides MMP_RS01365 and MMP_RS01370 are separated by 531 nucleotides
MMP_RS01355: MMP_RS01355 - 50S ribosomal protein L37Ae, at 251,152 to 251,442
_RS01355
MMP_RS01360: MMP_RS01360 - ribosome assembly factor SBDS, at 251,472 to 252,176
_RS01360
MMP_RS01365: MMP_RS01365 - archaeal proteasome endopeptidase complex subunit alpha, at 252,275 to 253,054
_RS01365
MMP_RS01370: MMP_RS01370 - acetate--CoA ligase family protein, at 253,586 to 255,694
_RS01370
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 251.491 kb on + strand at 251.495 kb on - strand at 252.199 kb on + strand at 252.389 kb on - strand, within MMP_RS01365 at 252.454 kb on - strand, within MMP_RS01365 at 252.681 kb on - strand, within MMP_RS01365 at 252.681 kb on - strand, within MMP_RS01365 at 253.056 kb on - strand at 253.056 kb on - strand at 253.057 kb on + strand at 253.057 kb on + strand at 253.082 kb on + strand at 253.108 kb on - strand at 253.108 kb on - strand at 253.109 kb on + strand at 253.109 kb on + strand at 253.115 kb on - strand at 253.133 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.138 kb on + strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.139 kb on - strand at 253.140 kb on + strand at 253.140 kb on + strand at 253.140 kb on + strand at 253.175 kb on - strand at 253.176 kb on + strand at 253.176 kb on + strand at 253.178 kb on + strand at 253.186 kb on + strand at 253.200 kb on - strand at 253.210 kb on - strand at 253.216 kb on - strand at 253.226 kb on - strand at 253.451 kb on + strand at 253.452 kb on - strand at 253.455 kb on + strand at 253.455 kb on + strand at 253.455 kb on + strand at 253.526 kb on - strand at 253.580 kb on + strand at 253.595 kb on - strand at 253.595 kb on - strand at 253.597 kb on - strand at 253.597 kb on - strand at 253.598 kb on + strand at 253.602 kb on + strand at 253.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 251,491 + -0.6 251,495 - -0.3 252,199 + +0.2 252,389 - MMP_RS01365 0.15 +0.3 252,454 - MMP_RS01365 0.23 -2.6 252,681 - MMP_RS01365 0.52 -0.0 252,681 - MMP_RS01365 0.52 -2.8 253,056 - -2.8 253,056 - -2.6 253,057 + -2.1 253,057 + -2.4 253,082 + +0.1 253,108 - +0.9 253,108 - +0.4 253,109 + -0.7 253,109 + +0.6 253,115 - -0.6 253,133 - -0.9 253,137 - -1.8 253,137 - -2.9 253,137 - +1.5 253,137 - +0.1 253,138 + +0.7 253,138 + -1.1 253,138 + +1.8 253,138 + -2.3 253,138 + -0.4 253,138 + -3.0 253,139 - +1.6 253,139 - +0.3 253,139 - -0.7 253,139 - +0.2 253,139 - -2.2 253,140 + -0.1 253,140 + +0.0 253,140 + +0.2 253,175 - +1.0 253,176 + +1.7 253,176 + +1.6 253,178 + +1.7 253,186 + +0.1 253,200 - -0.2 253,210 - +0.3 253,216 - +1.0 253,226 - +0.4 253,451 + -0.1 253,452 - -0.5 253,455 + -2.0 253,455 + -3.2 253,455 + +1.0 253,526 - -2.9 253,580 + +0.6 253,595 - +0.1 253,595 - +1.3 253,597 - +1.9 253,597 - -0.4 253,598 + +0.9 253,602 + +0.7 253,741 - +1.6
Or see this region's nucleotide sequence