Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01310

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01300 and MMP_RS01305 are separated by 1 nucleotidesMMP_RS01305 and MMP_RS01310 overlap by 20 nucleotidesMMP_RS01310 and MMP_RS01315 are separated by 3 nucleotides MMP_RS01300: MMP_RS01300 - hypothetical protein, at 244,445 to 244,930 _RS01300 MMP_RS01305: MMP_RS01305 - hypothetical protein, at 244,932 to 245,789 _RS01305 MMP_RS01310: MMP_RS01310 - hypothetical protein, at 245,770 to 246,333 _RS01310 MMP_RS01315: MMP_RS01315 - DUF2341 domain-containing protein, at 246,337 to 248,100 _RS01315 Position (kb) 245 246 247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 244.798 kb on - strand, within MMP_RS01300at 244.798 kb on - strand, within MMP_RS01300at 244.799 kb on + strand, within MMP_RS01300at 244.980 kb on - strandat 245.022 kb on - strand, within MMP_RS01305at 245.133 kb on - strand, within MMP_RS01305at 245.151 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.154 kb on - strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.155 kb on + strand, within MMP_RS01305at 245.203 kb on + strand, within MMP_RS01305at 245.203 kb on + strand, within MMP_RS01305at 245.242 kb on - strand, within MMP_RS01305at 245.248 kb on + strand, within MMP_RS01305at 245.253 kb on + strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.266 kb on - strand, within MMP_RS01305at 245.267 kb on + strand, within MMP_RS01305at 245.271 kb on - strand, within MMP_RS01305at 245.274 kb on - strand, within MMP_RS01305at 245.293 kb on + strand, within MMP_RS01305at 245.297 kb on - strand, within MMP_RS01305at 245.298 kb on + strand, within MMP_RS01305at 245.298 kb on + strand, within MMP_RS01305at 245.339 kb on - strand, within MMP_RS01305at 245.435 kb on - strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.436 kb on + strand, within MMP_RS01305at 245.509 kb on - strand, within MMP_RS01305at 245.560 kb on - strand, within MMP_RS01305at 245.560 kb on - strand, within MMP_RS01305at 245.561 kb on + strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.621 kb on - strand, within MMP_RS01305at 245.622 kb on + strand, within MMP_RS01305at 245.625 kb on - strand, within MMP_RS01305at 245.625 kb on - strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.626 kb on + strand, within MMP_RS01305at 245.701 kb on - strand, within MMP_RS01305at 245.706 kb on + strandat 245.706 kb on + strandat 245.710 kb on + strandat 245.720 kb on - strandat 245.754 kb on - strandat 245.754 kb on - strandat 245.761 kb on - strandat 245.822 kb on - strandat 245.822 kb on - strandat 245.823 kb on + strandat 245.861 kb on + strand, within MMP_RS01310at 245.893 kb on - strand, within MMP_RS01310at 245.894 kb on + strand, within MMP_RS01310at 245.894 kb on + strand, within MMP_RS01310at 245.901 kb on - strand, within MMP_RS01310at 245.902 kb on + strand, within MMP_RS01310at 245.902 kb on + strand, within MMP_RS01310at 245.905 kb on + strand, within MMP_RS01310at 245.906 kb on - strand, within MMP_RS01310at 245.907 kb on + strand, within MMP_RS01310at 245.929 kb on + strand, within MMP_RS01310at 245.933 kb on - strand, within MMP_RS01310at 245.934 kb on + strand, within MMP_RS01310at 245.945 kb on - strand, within MMP_RS01310at 245.946 kb on + strand, within MMP_RS01310at 245.971 kb on + strand, within MMP_RS01310at 245.991 kb on - strand, within MMP_RS01310at 245.998 kb on + strand, within MMP_RS01310at 246.052 kb on + strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.055 kb on - strand, within MMP_RS01310at 246.056 kb on + strand, within MMP_RS01310at 246.060 kb on + strand, within MMP_RS01310at 246.124 kb on + strand, within MMP_RS01310at 246.136 kb on + strand, within MMP_RS01310at 246.157 kb on - strand, within MMP_RS01310at 246.233 kb on + strand, within MMP_RS01310at 246.281 kb on + strandat 246.300 kb on - strandat 246.314 kb on - strandat 246.314 kb on - strandat 246.359 kb on - strandat 246.403 kb on + strandat 246.403 kb on + strandat 246.403 kb on + strandat 246.410 kb on - strandat 246.411 kb on + strandat 246.416 kb on - strandat 246.517 kb on + strand, within MMP_RS01315at 246.520 kb on + strand, within MMP_RS01315at 246.527 kb on - strand, within MMP_RS01315at 246.566 kb on + strand, within MMP_RS01315at 246.604 kb on - strand, within MMP_RS01315at 246.643 kb on + strand, within MMP_RS01315at 246.644 kb on - strand, within MMP_RS01315at 246.702 kb on - strand, within MMP_RS01315at 246.703 kb on + strand, within MMP_RS01315at 246.720 kb on - strand, within MMP_RS01315at 246.720 kb on - strand, within MMP_RS01315at 246.736 kb on - strand, within MMP_RS01315at 246.743 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.751 kb on - strand, within MMP_RS01315at 246.752 kb on + strand, within MMP_RS01315at 246.752 kb on + strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.770 kb on - strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.771 kb on + strand, within MMP_RS01315at 246.772 kb on - strand, within MMP_RS01315at 246.772 kb on - strand, within MMP_RS01315at 246.823 kb on + strand, within MMP_RS01315at 246.824 kb on - strand, within MMP_RS01315at 246.824 kb on - strand, within MMP_RS01315at 246.825 kb on + strand, within MMP_RS01315at 246.842 kb on - strand, within MMP_RS01315at 246.942 kb on - strand, within MMP_RS01315at 246.946 kb on + strand, within MMP_RS01315at 247.130 kb on - strand, within MMP_RS01315at 247.193 kb on - strand, within MMP_RS01315at 247.193 kb on - strand, within MMP_RS01315at 247.233 kb on + strand, within MMP_RS01315at 247.235 kb on - strand, within MMP_RS01315at 247.246 kb on - strand, within MMP_RS01315at 247.283 kb on - strand, within MMP_RS01315at 247.307 kb on + strand, within MMP_RS01315at 247.311 kb on - strand, within MMP_RS01315

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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244,798 - MMP_RS01300 0.73 -2.4
244,798 - MMP_RS01300 0.73 +1.1
244,799 + MMP_RS01300 0.73 -0.7
244,980 - +0.4
245,022 - MMP_RS01305 0.10 -0.2
245,133 - MMP_RS01305 0.23 +1.2
245,151 - MMP_RS01305 0.26 -1.8
245,154 - MMP_RS01305 0.26 -1.9
245,154 - MMP_RS01305 0.26 -1.9
245,154 - MMP_RS01305 0.26 +1.1
245,155 + MMP_RS01305 0.26 +0.1
245,155 + MMP_RS01305 0.26 -2.0
245,155 + MMP_RS01305 0.26 -0.6
245,155 + MMP_RS01305 0.26 -2.2
245,203 + MMP_RS01305 0.32 +0.0
245,203 + MMP_RS01305 0.32 +0.2
245,242 - MMP_RS01305 0.36 -1.8
245,248 + MMP_RS01305 0.37 +0.0
245,253 + MMP_RS01305 0.37 +0.6
245,266 - MMP_RS01305 0.39 -3.8
245,266 - MMP_RS01305 0.39 -0.5
245,266 - MMP_RS01305 0.39 -1.5
245,266 - MMP_RS01305 0.39 +0.2
245,267 + MMP_RS01305 0.39 +1.6
245,271 - MMP_RS01305 0.40 +0.4
245,274 - MMP_RS01305 0.40 +0.8
245,293 + MMP_RS01305 0.42 -3.7
245,297 - MMP_RS01305 0.43 +0.1
245,298 + MMP_RS01305 0.43 +0.6
245,298 + MMP_RS01305 0.43 -1.9
245,339 - MMP_RS01305 0.47 -1.4
245,435 - MMP_RS01305 0.59 -1.2
245,436 + MMP_RS01305 0.59 +0.6
245,436 + MMP_RS01305 0.59 -0.7
245,436 + MMP_RS01305 0.59 +0.0
245,436 + MMP_RS01305 0.59 -0.3
245,509 - MMP_RS01305 0.67 -3.0
245,560 - MMP_RS01305 0.73 +0.4
245,560 - MMP_RS01305 0.73 +1.2
245,561 + MMP_RS01305 0.73 -1.5
245,621 - MMP_RS01305 0.80 -2.4
245,621 - MMP_RS01305 0.80 +1.4
245,621 - MMP_RS01305 0.80 -3.8
245,621 - MMP_RS01305 0.80 -1.2
245,622 + MMP_RS01305 0.80 -2.3
245,625 - MMP_RS01305 0.81 +2.2
245,625 - MMP_RS01305 0.81 +0.9
245,626 + MMP_RS01305 0.81 -0.2
245,626 + MMP_RS01305 0.81 -2.5
245,626 + MMP_RS01305 0.81 +0.7
245,626 + MMP_RS01305 0.81 +1.7
245,701 - MMP_RS01305 0.90 +2.2
245,706 + -2.7
245,706 + -3.6
245,710 + +1.3
245,720 - -1.0
245,754 - +0.6
245,754 - +1.5
245,761 - -2.6
245,822 - -1.6
245,822 - +2.1
245,823 + -1.7
245,861 + MMP_RS01310 0.16 -3.7
245,893 - MMP_RS01310 0.22 +0.7
245,894 + MMP_RS01310 0.22 -2.9
245,894 + MMP_RS01310 0.22 -0.6
245,901 - MMP_RS01310 0.23 +0.7
245,902 + MMP_RS01310 0.23 +2.2
245,902 + MMP_RS01310 0.23 +0.8
245,905 + MMP_RS01310 0.24 -0.1
245,906 - MMP_RS01310 0.24 -0.0
245,907 + MMP_RS01310 0.24 -1.9
245,929 + MMP_RS01310 0.28 -3.8
245,933 - MMP_RS01310 0.29 -2.6
245,934 + MMP_RS01310 0.29 +0.1
245,945 - MMP_RS01310 0.31 -0.0
245,946 + MMP_RS01310 0.31 -0.9
245,971 + MMP_RS01310 0.36 +1.5
245,991 - MMP_RS01310 0.39 +0.2
245,998 + MMP_RS01310 0.40 +1.5
246,052 + MMP_RS01310 0.50 -0.0
246,055 - MMP_RS01310 0.51 +1.8
246,055 - MMP_RS01310 0.51 -3.3
246,055 - MMP_RS01310 0.51 +0.2
246,056 + MMP_RS01310 0.51 -0.5
246,060 + MMP_RS01310 0.51 -0.9
246,124 + MMP_RS01310 0.63 +0.4
246,136 + MMP_RS01310 0.65 +0.4
246,157 - MMP_RS01310 0.69 +0.6
246,233 + MMP_RS01310 0.82 -0.5
246,281 + +0.2
246,300 - +0.7
246,314 - +0.7
246,314 - -1.2
246,359 - +0.6
246,403 + +1.2
246,403 + -0.1
246,403 + -2.8
246,410 - +0.6
246,411 + -0.9
246,416 - +0.6
246,517 + MMP_RS01315 0.10 +1.2
246,520 + MMP_RS01315 0.10 -0.9
246,527 - MMP_RS01315 0.11 +0.5
246,566 + MMP_RS01315 0.13 -2.3
246,604 - MMP_RS01315 0.15 -2.3
246,643 + MMP_RS01315 0.17 +0.8
246,644 - MMP_RS01315 0.17 +0.4
246,702 - MMP_RS01315 0.21 +2.2
246,703 + MMP_RS01315 0.21 -0.7
246,720 - MMP_RS01315 0.22 +1.7
246,720 - MMP_RS01315 0.22 +1.1
246,736 - MMP_RS01315 0.23 -0.3
246,743 - MMP_RS01315 0.23 -0.3
246,751 - MMP_RS01315 0.23 -0.5
246,751 - MMP_RS01315 0.23 +0.2
246,751 - MMP_RS01315 0.23 -0.3
246,752 + MMP_RS01315 0.24 -3.8
246,752 + MMP_RS01315 0.24 -0.8
246,770 - MMP_RS01315 0.25 -1.9
246,770 - MMP_RS01315 0.25 +1.0
246,770 - MMP_RS01315 0.25 +1.1
246,771 + MMP_RS01315 0.25 -0.3
246,771 + MMP_RS01315 0.25 -1.5
246,771 + MMP_RS01315 0.25 -0.4
246,772 - MMP_RS01315 0.25 -1.1
246,772 - MMP_RS01315 0.25 -0.0
246,823 + MMP_RS01315 0.28 +0.9
246,824 - MMP_RS01315 0.28 +0.3
246,824 - MMP_RS01315 0.28 +0.0
246,825 + MMP_RS01315 0.28 -3.3
246,842 - MMP_RS01315 0.29 -3.7
246,942 - MMP_RS01315 0.34 -0.1
246,946 + MMP_RS01315 0.35 +1.3
247,130 - MMP_RS01315 0.45 +1.3
247,193 - MMP_RS01315 0.49 -0.0
247,193 - MMP_RS01315 0.49 +1.1
247,233 + MMP_RS01315 0.51 +1.5
247,235 - MMP_RS01315 0.51 -3.8
247,246 - MMP_RS01315 0.52 +0.4
247,283 - MMP_RS01315 0.54 +1.8
247,307 + MMP_RS01315 0.55 -3.2
247,311 - MMP_RS01315 0.55 +1.4

Or see this region's nucleotide sequence