Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01100 and MMP_RS01105 are separated by 29 nucleotides MMP_RS01105 and MMP_RS01110 are separated by 16 nucleotides MMP_RS01110 and MMP_RS01115 are separated by 26 nucleotides
MMP_RS01100: MMP_RS01100 - ABC transporter ATP-binding protein, at 206,036 to 206,818
_RS01100
MMP_RS01105: MMP_RS01105 - hypothetical protein, at 206,848 to 207,624
_RS01105
MMP_RS01110: MMP_RS01110 - FmdE family protein, at 207,641 to 208,225
_RS01110
MMP_RS01115: MMP_RS01115 - molybdopterin molybdotransferase MoeA, at 208,252 to 209,379
_RS01115
Position (kb) 207
208
209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 206.761 kb on - strand at 206.803 kb on + strand at 206.948 kb on - strand, within MMP_RS01105 at 207.053 kb on - strand, within MMP_RS01105 at 207.053 kb on - strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.054 kb on + strand, within MMP_RS01105 at 207.064 kb on + strand, within MMP_RS01105 at 207.365 kb on - strand, within MMP_RS01105 at 207.383 kb on - strand, within MMP_RS01105 at 207.390 kb on - strand, within MMP_RS01105 at 207.390 kb on - strand, within MMP_RS01105 at 207.652 kb on + strand at 207.817 kb on - strand, within MMP_RS01110 at 208.044 kb on - strand, within MMP_RS01110 at 208.045 kb on + strand, within MMP_RS01110 at 208.165 kb on - strand, within MMP_RS01110 at 208.278 kb on - strand at 208.299 kb on - strand at 208.648 kb on + strand, within MMP_RS01115 at 208.648 kb on + strand, within MMP_RS01115 at 208.929 kb on - strand, within MMP_RS01115 at 208.973 kb on + strand, within MMP_RS01115 at 208.988 kb on - strand, within MMP_RS01115 at 209.078 kb on - strand, within MMP_RS01115 at 209.079 kb on + strand, within MMP_RS01115 at 209.079 kb on + strand, within MMP_RS01115 at 209.111 kb on - strand, within MMP_RS01115
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 206,761 - -4.2 206,803 + -1.2 206,948 - MMP_RS01105 0.13 +0.2 207,053 - MMP_RS01105 0.26 +1.2 207,053 - MMP_RS01105 0.26 +1.6 207,054 + MMP_RS01105 0.27 +0.7 207,054 + MMP_RS01105 0.27 -2.7 207,054 + MMP_RS01105 0.27 +1.6 207,064 + MMP_RS01105 0.28 -0.6 207,365 - MMP_RS01105 0.67 +1.4 207,383 - MMP_RS01105 0.69 +0.0 207,390 - MMP_RS01105 0.70 -0.4 207,390 - MMP_RS01105 0.70 +0.1 207,652 + +1.1 207,817 - MMP_RS01110 0.30 -4.3 208,044 - MMP_RS01110 0.69 -1.3 208,045 + MMP_RS01110 0.69 -0.9 208,165 - MMP_RS01110 0.90 +1.1 208,278 - +1.5 208,299 - -1.6 208,648 + MMP_RS01115 0.35 -0.4 208,648 + MMP_RS01115 0.35 +0.6 208,929 - MMP_RS01115 0.60 +1.2 208,973 + MMP_RS01115 0.64 +0.6 208,988 - MMP_RS01115 0.65 +1.3 209,078 - MMP_RS01115 0.73 +0.9 209,079 + MMP_RS01115 0.73 +0.7 209,079 + MMP_RS01115 0.73 +0.6 209,111 - MMP_RS01115 0.76 +0.1
Or see this region's nucleotide sequence