Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01080 and MMP_RS01085 are separated by 202 nucleotides MMP_RS01085 and MMP_RS01090 are separated by 182 nucleotides MMP_RS01090 and MMP_RS01095 overlap by 8 nucleotides MMP_RS01095 and MMP_RS01100 overlap by 1 nucleotides
MMP_RS01080: MMP_RS01080 - DUF2202 domain-containing protein, at 202,505 to 203,332
_RS01080
MMP_RS01085: MMP_RS01085 - hypothetical protein, at 203,535 to 203,849
_RS01085
MMP_RS01090: MMP_RS01090 - ABC transporter substrate-binding protein, at 204,032 to 205,093
_RS01090
MMP_RS01095: MMP_RS01095 - iron ABC transporter permease, at 205,086 to 206,036
_RS01095
MMP_RS01100: MMP_RS01100 - ABC transporter ATP-binding protein, at 206,036 to 206,818
_RS01100
Position (kb) 204
205
206 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 203.169 kb on + strand, within MMP_RS01080 at 203.385 kb on + strand at 203.430 kb on - strand at 203.443 kb on + strand at 203.532 kb on - strand at 203.553 kb on + strand at 203.615 kb on + strand, within MMP_RS01085 at 203.909 kb on - strand at 204.027 kb on - strand at 204.193 kb on + strand, within MMP_RS01090 at 204.366 kb on - strand, within MMP_RS01090 at 204.476 kb on + strand, within MMP_RS01090 at 204.476 kb on + strand, within MMP_RS01090 at 204.480 kb on + strand, within MMP_RS01090 at 204.485 kb on + strand, within MMP_RS01090 at 204.527 kb on - strand, within MMP_RS01090 at 204.562 kb on - strand, within MMP_RS01090 at 204.562 kb on - strand, within MMP_RS01090 at 204.577 kb on + strand, within MMP_RS01090 at 204.694 kb on - strand, within MMP_RS01090 at 204.694 kb on - strand, within MMP_RS01090 at 204.695 kb on + strand, within MMP_RS01090 at 204.790 kb on + strand, within MMP_RS01090 at 204.992 kb on - strand at 204.992 kb on - strand at 204.992 kb on - strand at 204.992 kb on - strand at 204.993 kb on + strand at 204.993 kb on + strand at 204.993 kb on + strand at 205.012 kb on + strand at 205.032 kb on + strand at 205.051 kb on + strand at 205.054 kb on - strand at 205.155 kb on - strand at 205.155 kb on - strand at 205.174 kb on - strand at 205.319 kb on - strand, within MMP_RS01095 at 205.359 kb on + strand, within MMP_RS01095 at 205.434 kb on - strand, within MMP_RS01095 at 205.443 kb on - strand, within MMP_RS01095 at 205.970 kb on - strand at 206.015 kb on + strand at 206.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 203,169 + MMP_RS01080 0.80 -0.4 203,385 + +0.8 203,430 - +2.4 203,443 + +1.3 203,532 - -1.3 203,553 + -1.5 203,615 + MMP_RS01085 0.25 +1.7 203,909 - -0.4 204,027 - +0.6 204,193 + MMP_RS01090 0.15 +0.2 204,366 - MMP_RS01090 0.31 +1.2 204,476 + MMP_RS01090 0.42 -2.3 204,476 + MMP_RS01090 0.42 -1.1 204,480 + MMP_RS01090 0.42 -0.3 204,485 + MMP_RS01090 0.43 -0.2 204,527 - MMP_RS01090 0.47 +0.3 204,562 - MMP_RS01090 0.50 -3.1 204,562 - MMP_RS01090 0.50 -2.4 204,577 + MMP_RS01090 0.51 +0.3 204,694 - MMP_RS01090 0.62 +0.3 204,694 - MMP_RS01090 0.62 -2.9 204,695 + MMP_RS01090 0.62 -1.6 204,790 + MMP_RS01090 0.71 +1.1 204,992 - -3.9 204,992 - -0.0 204,992 - -0.4 204,992 - -0.5 204,993 + +1.7 204,993 + +1.4 204,993 + +1.8 205,012 + -1.2 205,032 + +0.3 205,051 + -2.5 205,054 - +1.4 205,155 - +1.4 205,155 - -0.6 205,174 - +1.2 205,319 - MMP_RS01095 0.25 -0.1 205,359 + MMP_RS01095 0.29 +0.4 205,434 - MMP_RS01095 0.37 +1.9 205,443 - MMP_RS01095 0.38 +0.3 205,970 - -1.4 206,015 + +1.6 206,034 - +0.2
Or see this region's nucleotide sequence