Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00940 and MMP_RS00945 are separated by 1 nucleotides MMP_RS00945 and MMP_RS00950 are separated by 112 nucleotides MMP_RS00950 and MMP_RS00955 are separated by 21 nucleotides MMP_RS00955 and MMP_RS00960 are separated by 3 nucleotides
MMP_RS00940: MMP_RS00940 - daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein, at 175,831 to 176,799
_RS00940
MMP_RS00945: MMP_RS00945 - PadR family transcriptional regulator, at 176,801 to 177,259
_RS00945
MMP_RS00950: MMP_RS00950 - site-2 protease family protein, at 177,372 to 178,499
_RS00950
MMP_RS00955: MMP_RS00955 - coenzyme gamma-F420-2:alpha-L-glutamate ligase, at 178,521 to 179,378
_RS00955
MMP_RS00960: MMP_RS00960 - iron export ABC transporter permease subunit FetB, at 179,382 to 180,128
_RS00960
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 176.412 kb on - strand, within MMP_RS00940 at 176.429 kb on + strand, within MMP_RS00940 at 176.435 kb on + strand, within MMP_RS00940 at 176.460 kb on - strand, within MMP_RS00940 at 176.652 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.656 kb on - strand, within MMP_RS00940 at 176.657 kb on + strand, within MMP_RS00940 at 176.743 kb on - strand at 176.749 kb on - strand at 176.750 kb on + strand at 176.757 kb on - strand at 176.834 kb on + strand at 177.212 kb on - strand, within MMP_RS00945 at 177.239 kb on - strand at 177.247 kb on - strand at 177.317 kb on - strand at 177.353 kb on - strand at 177.354 kb on + strand at 177.737 kb on + strand, within MMP_RS00950 at 178.056 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.117 kb on - strand, within MMP_RS00950 at 178.181 kb on + strand, within MMP_RS00950 at 178.242 kb on + strand, within MMP_RS00950 at 178.270 kb on - strand, within MMP_RS00950 at 178.417 kb on - strand at 178.449 kb on + strand at 178.451 kb on + strand at 178.472 kb on + strand at 178.604 kb on - strand at 178.670 kb on + strand, within MMP_RS00955 at 178.758 kb on - strand, within MMP_RS00955 at 179.123 kb on - strand, within MMP_RS00955 at 179.124 kb on + strand, within MMP_RS00955 at 179.126 kb on - strand, within MMP_RS00955 at 179.126 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.143 kb on - strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.144 kb on + strand, within MMP_RS00955 at 179.146 kb on + strand, within MMP_RS00955 at 179.229 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.231 kb on - strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.232 kb on + strand, within MMP_RS00955 at 179.285 kb on + strand, within MMP_RS00955 at 179.386 kb on - strand at 179.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 176,412 - MMP_RS00940 0.60 -0.3 176,429 + MMP_RS00940 0.62 -2.9 176,435 + MMP_RS00940 0.62 -0.0 176,460 - MMP_RS00940 0.65 +0.1 176,652 - MMP_RS00940 0.85 +1.0 176,656 - MMP_RS00940 0.85 +1.1 176,656 - MMP_RS00940 0.85 +0.1 176,657 + MMP_RS00940 0.85 -3.6 176,743 - -0.6 176,749 - +0.7 176,750 + +0.3 176,757 - +0.3 176,834 + +0.4 177,212 - MMP_RS00945 0.90 -2.6 177,239 - +1.5 177,247 - -2.4 177,317 - +1.1 177,353 - -2.2 177,354 + +1.0 177,737 + MMP_RS00950 0.32 -1.5 178,056 - MMP_RS00950 0.61 +1.7 178,117 - MMP_RS00950 0.66 +0.7 178,117 - MMP_RS00950 0.66 +0.8 178,117 - MMP_RS00950 0.66 -0.8 178,181 + MMP_RS00950 0.72 +0.5 178,242 + MMP_RS00950 0.77 +1.4 178,270 - MMP_RS00950 0.80 +1.2 178,417 - +0.2 178,449 + -1.0 178,451 + -0.0 178,472 + -0.6 178,604 - -1.4 178,670 + MMP_RS00955 0.17 +1.7 178,758 - MMP_RS00955 0.28 +1.2 179,123 - MMP_RS00955 0.70 -0.5 179,124 + MMP_RS00955 0.70 -1.4 179,126 - MMP_RS00955 0.71 +1.9 179,126 - MMP_RS00955 0.71 +1.5 179,143 - MMP_RS00955 0.72 +0.1 179,143 - MMP_RS00955 0.72 -0.8 179,144 + MMP_RS00955 0.73 -0.1 179,144 + MMP_RS00955 0.73 -0.5 179,144 + MMP_RS00955 0.73 +0.3 179,144 + MMP_RS00955 0.73 +0.6 179,146 + MMP_RS00955 0.73 -1.7 179,229 - MMP_RS00955 0.83 -1.8 179,231 - MMP_RS00955 0.83 +0.0 179,231 - MMP_RS00955 0.83 -0.5 179,232 + MMP_RS00955 0.83 +0.4 179,232 + MMP_RS00955 0.83 +0.5 179,285 + MMP_RS00955 0.89 +2.3 179,386 - +1.0 179,438 + +0.2
Or see this region's nucleotide sequence