Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00645 and MMP_RS00650 overlap by 10 nucleotides MMP_RS00650 and MMP_RS00655 are separated by 3 nucleotides MMP_RS00655 and MMP_RS00660 are separated by 7 nucleotides
MMP_RS00645: MMP_RS00645 - iron ABC transporter permease, at 117,416 to 119,032
_RS00645
MMP_RS00650: MMP_RS00650 - ABC transporter ATP-binding protein, at 119,023 to 119,991
_RS00650
MMP_RS00655: MMP_RS00655 - hypothetical protein, at 119,995 to 120,534
_RS00655
MMP_RS00660: MMP_RS00660 - alkaline phosphatase family protein, at 120,542 to 121,822
_RS00660
Position (kb) 119
120
121 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 119.214 kb on - strand, within MMP_RS00650 at 119.462 kb on - strand, within MMP_RS00650 at 119.463 kb on + strand, within MMP_RS00650 at 119.681 kb on + strand, within MMP_RS00650 at 119.748 kb on + strand, within MMP_RS00650 at 119.875 kb on - strand, within MMP_RS00650 at 119.875 kb on - strand, within MMP_RS00650 at 119.876 kb on + strand, within MMP_RS00650 at 119.888 kb on + strand, within MMP_RS00650 at 119.976 kb on - strand at 119.978 kb on - strand at 119.993 kb on - strand at 120.105 kb on - strand, within MMP_RS00655 at 120.247 kb on - strand, within MMP_RS00655 at 120.612 kb on - strand at 120.612 kb on - strand at 120.613 kb on + strand at 120.674 kb on - strand, within MMP_RS00660 at 120.674 kb on - strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.726 kb on + strand, within MMP_RS00660 at 120.726 kb on + strand, within MMP_RS00660 at 120.818 kb on + strand, within MMP_RS00660 at 120.905 kb on + strand, within MMP_RS00660 at 121.108 kb on - strand, within MMP_RS00660 at 121.129 kb on - strand, within MMP_RS00660 at 121.370 kb on - strand, within MMP_RS00660 at 121.406 kb on - strand, within MMP_RS00660 at 121.449 kb on + strand, within MMP_RS00660 at 121.478 kb on + strand, within MMP_RS00660 at 121.478 kb on + strand, within MMP_RS00660 at 121.483 kb on - strand, within MMP_RS00660
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 119,214 - MMP_RS00650 0.20 +0.3 119,462 - MMP_RS00650 0.45 -1.4 119,463 + MMP_RS00650 0.45 -4.1 119,681 + MMP_RS00650 0.68 -0.1 119,748 + MMP_RS00650 0.75 +0.2 119,875 - MMP_RS00650 0.88 -2.5 119,875 - MMP_RS00650 0.88 -0.0 119,876 + MMP_RS00650 0.88 +0.8 119,888 + MMP_RS00650 0.89 -0.8 119,976 - +0.9 119,978 - +0.4 119,993 - -0.9 120,105 - MMP_RS00655 0.20 -0.9 120,247 - MMP_RS00655 0.47 -0.0 120,612 - +1.9 120,612 - +1.3 120,613 + -0.6 120,674 - MMP_RS00660 0.10 -0.3 120,674 - MMP_RS00660 0.10 +1.1 120,675 + MMP_RS00660 0.10 +0.9 120,675 + MMP_RS00660 0.10 +0.1 120,675 + MMP_RS00660 0.10 -1.7 120,726 + MMP_RS00660 0.14 +1.1 120,726 + MMP_RS00660 0.14 -0.1 120,818 + MMP_RS00660 0.22 +0.6 120,905 + MMP_RS00660 0.28 +0.0 121,108 - MMP_RS00660 0.44 -0.6 121,129 - MMP_RS00660 0.46 -1.2 121,370 - MMP_RS00660 0.65 -1.0 121,406 - MMP_RS00660 0.67 -1.2 121,449 + MMP_RS00660 0.71 -0.1 121,478 + MMP_RS00660 0.73 -0.4 121,478 + MMP_RS00660 0.73 +1.5 121,483 - MMP_RS00660 0.73 +1.2
Or see this region's nucleotide sequence