Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00635

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
114,808	-		MMP_RS00625	0.63	-0.9
114,880	+		MMP_RS00625	0.76	+0.3
114,963	+				-0.3
114,963	+				-1.3
114,964	-				+0.3
114,965	+				-0.2
114,965	+				-0.4
115,069	+				+1.0
115,073	+				+1.2
115,073	+				+0.8
115,135	-				+1.6
115,135	-				+1.2
115,136	+				+1.5
115,326	-		MMP_RS00630	0.37	-0.4
115,344	+		MMP_RS00630	0.40	+0.2
115,615	-		MMP_RS00630	0.89	+0.9
115,616	+		MMP_RS00630	0.89	+0.5
115,616	+		MMP_RS00630	0.89	-0.2
115,618	-		MMP_RS00630	0.89	+0.9
115,618	-		MMP_RS00630	0.89	-1.0
115,619	+		MMP_RS00630	0.89	+0.5
115,676	+				+1.2
115,851	+		MMP_RS00635	0.31	+0.3
115,890	-		MMP_RS00635	0.39	+1.8
115,901	+		MMP_RS00635	0.41	+1.4
115,916	+		MMP_RS00635	0.44	+1.2
116,158	-		MMP_RS00635	0.90	-0.2
116,159	+				+1.5
116,271	+				-1.5
116,329	+				-1.5
116,347	-				-1.3
116,350	-				+0.8
116,435	-				+2.7
116,671	+		MMP_RS00640	0.31	+1.4
116,761	-		MMP_RS00640	0.40	+1.9
116,821	-		MMP_RS00640	0.45	+1.8
116,835	-		MMP_RS00640	0.47	+1.1
116,849	+		MMP_RS00640	0.48	+1.8
116,883	-		MMP_RS00640	0.51	-1.5
116,883	-		MMP_RS00640	0.51	+0.2
116,889	+		MMP_RS00640	0.52	+0.9
116,893	-		MMP_RS00640	0.52	+0.8
116,894	+		MMP_RS00640	0.53	+0.5
116,894	+		MMP_RS00640	0.53	-0.0
117,032	+		MMP_RS00640	0.66	+1.3